Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1645 ATGGTATCCCCCGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGACGACATCCCTGTACCGGATGCGAATTTCCCGGTCACGAGTTCAAGCTTCTCCTGGGCTATTCAGCCCTTTAACGGCATCCATGATACCGGTGTGGAAATTGAGGGATCATTGGCAGATCTGGATGACCGTCTAGAATCTGGCTCAAAAAAGAGGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCACCCAAAACTGACAAGGCTGCAATTTTAGTTGACGCGGTTCGAATGGTGAATCAGTTGCGTAGCGAAACCCAGAAACTAAAGGAATCAAATTCAAGTCTCCAGGAGAAGATTAAAGAGTTGAAGGCCGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTGAAGTCCATGCCTGCTCAACAACCGGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGGGTCAAGCTCCTGGCAATAAGTTAGTTCCTTTCATTGGTTACCACCCGAGTGTTGCCATGTGGCAGTTCATGCCACCTGCTGCGGTGGACACATCACAGGACCATGTACTCCGGCCACCCGTCGCATAA 708 49.29 MVSPENPNWLFDYGLIDDIPVPDANFPVTSSSFSWAIQPFNGIHDTGVEIEGSLADLDDRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPPIPTFAAQGQAPGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27158309 27160625 - CrPI670011_05g016450.1 Cre05g1645 498158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1645 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983(InterPro)
Cre05g1645 235 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Cre05g1645 235 Gene3D - 65 124 IPR036638 GO:0046983(InterPro)
Cre05g1645 235 FunFam Transcription factor bHLH34 66 124 - -
Cre05g1645 235 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Cre05g1645 235 CDD bZIP 141 173 - -
Cre05g1645 235 CDD bHLH_AtILR3_like 83 155 - -
Cre05g1645 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Cre05g1645 235 Coils Coil 123 178 - -
Cre05g1645 235 PANTHER BHLH TRANSCRIPTION FACTOR 8 235 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cre05g1645 235 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1168 Cre-Chr2:10832553 Cre05g1645 Cre-Chr5:27158309 2.50E-55 dispersed
Cre02g1460 Cre-Chr2:26416165 Cre05g1645 Cre-Chr5:27158309 3.10E-11 dispersed
Cre03g0802 Cre-Chr3:6767932 Cre05g1645 Cre-Chr5:27158309 9.20E-47 dispersed
Cre04g1646 Cre-Chr4:34844307 Cre05g1645 Cre-Chr5:27158309 1.30E-09 dispersed
Cre05g0531 Cre-Chr5:4731363 Cre05g1645 Cre-Chr5:27158309 4.70E-29 dispersed
Cre05g1645 Cre-Chr5:27158309 Cre10g0787 Cre-Chr10:7746780 1.30E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53710 PF00010 HLH 1.10E-09 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1645 - - - 0.0