Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g1645 | ATGGTATCCCCCGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGACGACATCCCTGTACCGGATGCGAATTTCCCGGTCACGAGTTCAAGCTTCTCCTGGGCTATTCAGCCCTTTAACGGCATCCATGATACCGGTGTGGAAATTGAGGGATCATTGGCAGATCTGGATGACCGTCTAGAATCTGGCTCAAAAAAGAGGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCACCCAAAACTGACAAGGCTGCAATTTTAGTTGACGCGGTTCGAATGGTGAATCAGTTGCGTAGCGAAACCCAGAAACTAAAGGAATCAAATTCAAGTCTCCAGGAGAAGATTAAAGAGTTGAAGGCCGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTGAAGTCCATGCCTGCTCAACAACCGGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGGGTCAAGCTCCTGGCAATAAGTTAGTTCCTTTCATTGGTTACCACCCGAGTGTTGCCATGTGGCAGTTCATGCCACCTGCTGCGGTGGACACATCACAGGACCATGTACTCCGGCCACCCGTCGCATAA | 708 | 49.29 | MVSPENPNWLFDYGLIDDIPVPDANFPVTSSSFSWAIQPFNGIHDTGVEIEGSLADLDDRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPPIPTFAAQGQAPGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 27158309 | 27160625 | - | CrPI670011_05g016450.1 | Cre05g1645 | 498158 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g1645 | 235 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 75 | 146 | IPR036638 | GO:0046983(InterPro) | |
Cre05g1645 | 235 | Pfam | Helix-loop-helix DNA-binding domain | 79 | 127 | IPR011598 | GO:0046983(InterPro) | |
Cre05g1645 | 235 | Gene3D | - | 65 | 124 | IPR036638 | GO:0046983(InterPro) | |
Cre05g1645 | 235 | FunFam | Transcription factor bHLH34 | 66 | 124 | - | - | |
Cre05g1645 | 235 | Gene3D | arf6 gtpase in complex with a specific effector, jip4 | 125 | 179 | - | - | |
Cre05g1645 | 235 | CDD | bZIP | 141 | 173 | - | - | |
Cre05g1645 | 235 | CDD | bHLH_AtILR3_like | 83 | 155 | - | - | |
Cre05g1645 | 235 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 75 | 126 | IPR011598 | GO:0046983(InterPro) | |
Cre05g1645 | 235 | Coils | Coil | 123 | 178 | - | - | |
Cre05g1645 | 235 | PANTHER | BHLH TRANSCRIPTION FACTOR | 8 | 235 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
Cre05g1645 | 235 | SMART | finulus | 81 | 132 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1168 | Cre-Chr2:10832553 | Cre05g1645 | Cre-Chr5:27158309 | 2.50E-55 | dispersed | |
Cre02g1460 | Cre-Chr2:26416165 | Cre05g1645 | Cre-Chr5:27158309 | 3.10E-11 | dispersed | |
Cre03g0802 | Cre-Chr3:6767932 | Cre05g1645 | Cre-Chr5:27158309 | 9.20E-47 | dispersed | |
Cre04g1646 | Cre-Chr4:34844307 | Cre05g1645 | Cre-Chr5:27158309 | 1.30E-09 | dispersed | |
Cre05g0531 | Cre-Chr5:4731363 | Cre05g1645 | Cre-Chr5:27158309 | 4.70E-29 | dispersed | |
Cre05g1645 | Cre-Chr5:27158309 | Cre10g0787 | Cre-Chr10:7746780 | 1.30E-77 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53710 | PF00010 | HLH | 1.10E-09 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g1645 | - | - | - | 0.0 |