Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1652 ATGCCAACAGTTTGGTTTTCTCTGAAAAAGTCCTTCCCTTGCAAGCCAGAGCCATCAGAAGTCTATGATCCAAAGTGCAGGAAACAACTCAACGCAATCACAACTAAGAAAGCATCCAGAAAGTCAGGTTGTTCTTCTGGAAGGTCTGGTTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCACATGGAAAAACCACCGATTTGCAGCCCGAGGTCGATCGGTAGCAGCGAGTTCCTCAACCCAATTGCTCATGAAGTCATACTGAGCAACTCAAAGTGTGAGCTCAAGATCACTGGTTTTGGAAGCTTCCACCAAGAGGGTGTAGGAAATGCTGTCTTTGGAGGGGGCGCAGGTGGGAACTCGCCATTTTCCGGTACACTAAGACCCGGAACTCCTGGTCCGGGGGAGCACTTTGTTAACAACTCCAGTTCTCCTTTTAGTACTACCTCCATATCTGCTGCAAGAAAGCTTCCTTCTCTTAGAGATGGGCCTGCGGCTGGGAGTACTGCTAAATCTAAGGTGGGTGGGGAAATTCATACAAGCAAAAGGTTCTCCCCGCTAACCGAACTAAACGGTAATGCATTTTCGACGGTTACTTGCCATAAATGTGGAGAGCAGTTTTGCAAATTGGAGGCTGCTGAGTCTCACCATCTCTCTAAGCATGCTGTTACCGAGCTTGTGGAAGGTGATTCATCGAGGAAAATTGTCGAAATAATATGTCGAACGAACTTGTTGAAATCAGAGAACAATGGCAACCGTATCGAACGAGTCTTCAAAGTTCACAATATGCAAAAAACGTTAGCTGGATTTGAAGAATACAGGGAAATGGTGAAGATCAAGGCAAGCAAGCTTTCGAAGAAACACCCTCGATGCCTTGCGGATGGGAACGAGCTGCTGAGGTTTTACGGGACTACTTTAGGCTGCTCTCTTGGACTAAATGGCTCCTCCAGCCTCTGCATATCACAGAAATGCAATGTCTGCAGAATTATAAGGAATGGTTTCTCAGCAAAGAAGGATATGAAAGAAGAAGTAGGAGTTTTCACGACTTCAACGAGCGGAAAAGCTTTCGAAACCATTGAAACGACAGAAGAAAGCTCAGTAAAGAAAGCATTGATAATCTGCAGAGTGATTGCAGGGAGGGTTCATAGGCCTTTGGAGAATATACAAGATATGGTTGGCCAAACAGGGTTTGATTCTCTAGCTGGCAAAGTGGGATTACATTCCAACATTGAAGAGCTTTATTTGCTCAGTCCTAGAGCTTTGCTTCCTTGTTTTATTGTAATTTGCAAGCCATGA 1317 45.03 MPTVWFSLKKSFPCKPEPSEVYDPKCRKQLNAITTKKASRKSGCSSGRSGCSRSIANLKDVIHGSKRHMEKPPICSPRSIGSSEFLNPIAHEVILSNSKCELKITGFGSFHQEGVGNAVFGGGAGGNSPFSGTLRPGTPGPGEHFVNNSSSPFSTTSISAARKLPSLRDGPAAGSTAKSKVGGEIHTSKRFSPLTELNGNAFSTVTCHKCGEQFCKLEAAESHHLSKHAVTELVEGDSSRKIVEIICRTNLLKSENNGNRIERVFKVHNMQKTLAGFEEYREMVKIKASKLSKKHPRCLADGNELLRFYGTTLGCSLGLNGSSSLCISQKCNVCRIIRNGFSAKKDMKEEVGVFTTSTSGKAFETIETTEESSVKKALIICRVIAGRVHRPLENIQDMVGQTGFDSLAGKVGLHSNIEELYLLSPRALLPCFIVICKP 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27364797 27366418 + CrPI670011_05g016520.1 Cre05g1652 498165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1652 438 FunFam C2H2-like zinc finger protein 229 437 - -
Cre05g1652 438 ProSitePatterns Zinc finger C2H2 type domain signature. 207 228 IPR013087 -
Cre05g1652 438 Gene3D - 235 437 - -
Cre05g1652 438 SUPERFAMILY ADP-ribosylation 230 437 - -
Cre05g1652 438 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1652 Cre-Chr5:27364797 Cre05g2002 Cre-Chr5:32052705 1.20E-47 dispersed
Cre04g1852 Cre-Chr4:36217830 Cre05g1652 Cre-Chr5:27364797 5.50E-67 transposed
Cre10g0827 Cre-Chr10:8926570 Cre05g1652 Cre-Chr5:27364797 2.20E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1652 - - - 0.0