Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1664 ATGTCAAATTTATGCCCTCTCGTTCTTCTTCACGCACGCCAGCGCCGCCGTGGCCTCCACTCCGGACGACGACCTCTGCCGCACGCTGTCAACCGCCGAACGCGGCCGCTCGTGCCTCAATTCGACGGTAGTTTCTCTCTCTCATTCAGTGGGGTTCTCTCTCTCTACCGATTTTCCTTCCTCTTCCTCACTCTCTTCTCTGTCACAGCGCCGCCGCCAGCCGCCAGTTCGGTTCCTTGTGAGGAGTGGGCTCTATTGGAGTTAATTTTGGTTTGTGTTATGTGCTTTGGACCGGGGGTTCCGTTAATTGAGGATAACTTTATTTGTTGGAAGTTGGGTTTGAATTTTAAGTTGGGATCAGTTGCTGTTGGTATCATTCCAGGCTTCCAGCTGATACCAACAACAGTAGCTCTAATACCAACTGTAATACTTAGAGGTCCATGTCAGTTGACTTCAGGTTCTTTCTTCCCCTCTGTAGCTATGAAACGAGGATACTCAGAATCCCCATCCGCGTCTGTGGGGCCTCCCCAATCCAGATTCAAATACAACCCAGAAGGTGATGCTGAGTTTTTAGAAGATGAAAGCACCAAGATTTTTGCTCGGAAAGTGGCTGAACATTACAGTGCGAGGACGAATCAGACTTTGGAAGAGCGAGAAGCTAGTGTTATCATCCATTTAAAGAAGCTTAATAATTGGATTAAAAGTGTCTTGGTTCAGCTTTATGCTCGCAGAGGCGATGCCGTTCTTGATCTTGCCTGTGGCAAGGGTGGTGATCTTATCAAATGGGATAAGGCCAGAATTGGATATTATGTTGGCATCGATATAGCTGAAGGATCAATAGAAGATTGCCGTACTCGTTACAATGGTGACGCTGACCATCATCAGCGTCGTAAAAAGTTCTCATTTCCAGCCCGCCTAATATGTGGAGATTGTTATGAGGCGAGGCTGGATCATGTCTTAGCAGATGATGCTCCATTCGACATTTGCAGTTGCCAGTTTGCATTGCATTATTCTTGGTCTACTGAGGCCCGTGCACGACGTGCCTTATCCAATATATCAGCTCTTCTTCGCCCAGGAGGTATTCTCATTGGAACCATGCCAGATGCTAATGTAATTGTCAAAAAGCTTAGAGAAGCTCAAGGTTTGATGTTTGGAAATAGCGTTTATTGGATACGCTTTGATGAAGAATATGCTGAAAAGAAATTTAACGCTTCCAGCCCCTTTGGTATAAAGTACTTGTTTCATCTAGAGGATGCTGTTGATTGTCCCGAATGGATTGTCCCGTTTCATGTTTTCAAATCGTTGGCTGAAGAGTATGACTTAGAGTTGGTTTTTGTCAAGAACTCGCACGAATTTGTGCATGAGTACTTGAAAAAACCTGAATTCGTGGATCTAATGCGACGACTTGGCGCCTTGGGTGATGGCAACCAAGATCAGAGTACATTATCTCCGGACGAGTGGGAAGTGGCATATCTATACCTTTCGTTCGTTTTGAGAAAGCGAGGCCAGCCCAACAGGACACAGGCACCGAATAGAAGAGACAGAGGGCAAATGCAAATAGCAAAGGAGGACATAATGTACATTTCAACTGATTAA 1596 45.74 MSNLCPLVLLHARQRRRGLHSGRRPLPHAVNRRTRPLVPQFDGSFSLSFSGVLSLYRFSFLFLTLFSVTAPPPAASSVPCEEWALLELILVCVMCFGPGVPLIEDNFICWKLGLNFKLGSVAVGIIPGFQLIPTTVALIPTVILRGPCQLTSGSFFPSVAMKRGYSESPSASVGPPQSRFKYNPEGDAEFLEDESTKIFARKVAEHYSARTNQTLEEREASVIIHLKKLNNWIKSVLVQLYARRGDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEARLDHVLADDAPFDICSCQFALHYSWSTEARARRALSNISALLRPGGILIGTMPDANVIVKKLREAQGLMFGNSVYWIRFDEEYAEKKFNASSPFGIKYLFHLEDAVDCPEWIVPFHVFKSLAEEYDLELVFVKNSHEFVHEYLKKPEFVDLMRRLGALGDGNQDQSTLSPDEWEVAYLYLSFVLRKRGQPNRTQAPNRRDRGQMQIAKEDIMYISTD 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27705168 27713145 + CrPI670011_05g016640.1 Cre05g1664 498177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1664 531 ProSiteProfiles mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56) domain profile. 221 501 IPR004971 -
Cre05g1664 531 FunFam mRNA cap guanine-N7 methyltransferase 218 502 - -
Cre05g1664 531 CDD AdoMet_MTases 248 363 - -
Cre05g1664 531 Gene3D Vaccinia Virus protein VP39 219 502 IPR029063 -
Cre05g1664 531 PANTHER MRNA GUANINE-7- METHYLTRANSFERASE 185 504 IPR039753 GO:0004482(PANTHER)|GO:0004482(InterPro)|GO:0005634(PANTHER)|GO:0005845(PANTHER)|GO:0006370(PANTHER)
Cre05g1664 531 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 230 500 IPR029063 -
Cre05g1664 531 Pfam mRNA (guanine-N(7))-methyltransferase domain 192 501 IPR004971 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1664 K00565 - - csv:101217782 739.954
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g391 . . . . . . . . . . Cma01g01165 . . . . . Cpe02g00737 Bhi09g01965 Tan01g4483 . . Hepe01g1328 . . . . . . . . . . Cone9ag0116 . . Lsi04g01258 . Chy04g01032 . . . . . Bpe11g00516 . . Bma14g00368 . Cmo01g01220 . . . . Car16g00578 . . . . . . . . . Cla05g01557 Cam05g1664 Cec05g1669 Cco05g1709 Clacu05g1659 Cmu05g1552 Cre05g1664 . . . Cme04g00774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004967 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 40