Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1679 ATGAAGAAGTGCGAGCTGTGTGGGCAGCAAGCGAGGATGTTCTGTGAGTCGGATCAGGCGAACCTATGTTGGGACTGCGACGAGAAGGTTCACTGTGCAAATTTTCTTGTTGCTAAACATTCTCGGAGCCTTCTTTGTCATGTATGCCAGTCGCCGACTCCATGGGCGGCCTCTGGTCGGAAGCTTACGCCGACGGTTTCTGTGTGCGAGGGATGTGTCGATGTCCATGGTGGTAAATGCGAGCAAGGTGGATTTCAAGAGCGGCGTAGAGATAACGAGGAGGAAGTTGATGGTGGTGATGATTTTGACGATGGTGAAGGTTTCGATAGTTATGAGGGAGGTGATAGTGAGGAAGACGATGATGGGGATGAAGATGAGGACGAGGAAGAAGAGGATGAGGACGGAGAAAACCAGGTGGTGCCCTGGTCTTATGCATCTTCTTCGTCTCCACCACCGCCTCCGACAGTGACTTCTAGCAGCGAGGGCGAGATTTCAGCCGGCGCTGGTGTCGCATCGAAGCGGATGAGAGAATACGGCATCGATCTCGATTCCGATGATGAAATCGAGTGTTCTTCTGCACCACAGAGTACAAGGCCATTTTTCAATGACGAAGCGACTTCCTCGAGTTCCCTTAGGCCACTGAAGCAAGCACGAGTTACAGGACCGACCCAATCAGCCACATCCACTCCGGATGTTGAAGCTTGTAAACCCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGACTCCAGAATCGTCTTCCCACCGACATTAACGATGCTTCCAAAATGATCTTTGGGATACGCAAAATGAGCAGAGATCAGGATCGTTGA 837 51.02 MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSPTPWAASGRKLTPTVSVCEGCVDVHGGKCEQGGFQERRRDNEEEVDGGDDFDDGEGFDSYEGGDSEEDDDGDEDEDEEEEDEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMREYGIDLDSDDEIECSSAPQSTRPFFNDEATSSSSLRPLKQARVTGPTQSATSTPDVEACKPELKSTAVVRSIQRLQNRLPTDINDASKMIFGIRKMSRDQDR 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28151460 28152649 + CrPI670011_05g016790.1 Cre05g1679 498192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1679 278 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270(InterPro)
Cre05g1679 278 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270(InterPro)
Cre05g1679 278 CDD Bbox1_BBX-like 3 45 IPR049808 -
Cre05g1679 278 SMART bboxneu5 1 45 IPR000315 GO:0008270(InterPro)
Cre05g1679 278 MobiDBLite consensus disorder prediction 83 234 - -
Cre05g1679 278 MobiDBLite consensus disorder prediction 96 137 - -
Cre05g1679 278 MobiDBLite consensus disorder prediction 189 231 - -
Cre05g1679 278 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1679 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0834 Cre-Chr3:7085121 Cre05g1679 Cre-Chr5:28151460 7.70E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g338 . . . . . Bpe08g01148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g01054 . . . . . . . . . . . . . . . . . . . . . . . . . Cla05g01571 Cam05g1679 Cec05g1684 Cco05g1728 Clacu05g1670 Cmu05g1561 Cre05g1679 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000776 4 2 3 3 3 3 3 3 3 3 3 3 4 3 2 4 3 6 4 3 3 3 2 2 2 3 2 3 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53712 PF00643 zf-B_box 5.10E-06 No_clan Cre TR