Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1684 ATGGCGGACTACGGCGGCCACAATCTGGAAGTGGATCCAAGAAGCGGCTTCTGCAAATCCACAAAAATCTTCCACAGCAAACGCCGCCCAATCCCACTTCCCCCTAACCAATCCCTCGATGCGACGACGTTTATCTCTTCCCGCCCTCACAACGGCAAAATCGCCCTCATCGACGCCACCACCGGCCAACAAATCACCTATTCCCACCTCTGGAACTCCGTCGACGCCGTAGCCTCTTCCCTTTCCGACATGGGCATCCGAAAAGGCCACGTCATCCTCCTCCTTTCCCCAAACTCCATTTATTTTCCCATTATTTGCCTCGCCGTCATGTCCATCGGCGCCGTCATCACCACCACAAATCCCCTCAACACCCCTCAAGAAATCGCCAAACAAATCGCCGATTCCAAACCCATTTTAGCCTTCACTACCCAACAACTAATCCCCAAAATCGCCGCTTCCAAATTGCCAATCGTCATAATCGACGGTCAAGTTCCAAAATCCCCAGTCAAAATCGTGTCGACATTGAGCGAAATGATGAGGGAAAAACCAAGTGAGAGTCGAATTAAGGAACGCGTGGAGCAAAACGACACAGCGACTCTGCTTTATTCATCTGGAACGACAGGGGCGAGCAAAGGCGTAGTGTCGTCTCACAAGAATTTAATTGCAATGGTTCAAGTGGTTGTGACAAGGTTCAAATTAAGCGAAGGGGAAGGGACTTTTATTTGTACGGTCCCAATGTTTCATATTTACGGCCTTGTGGCTTTCGCTACGGGGTTGCTCTCTTCGGGATCTACAATCGTTGTATTATCGAAATTTGAGATTCATGAAATGTTGTCGGCGATTGACAAGTACAAGGCCACGTATCTGCCTCTTGTGCCGCCGATTCTGGTGGCGCTCGTGAACGCCGCCGACCAGATAAAGGGCAAGTACGATTTGGGGTCGTTGCACACGGCGTTGTCCGGCGGAGCGCCGCTTGGGAAGGAGGTGATTGAGGGTTTTGTTGAGAAATATCCGAATGTCGCAATTCTTCAGGGTTATGGATTGACGGAATCCACCGGAATTGGGGCGTCCACCGATTCGCTGGAGGAGAGCCGCCGATACGGCACGGCGGGGCTTCTGTCGCCGAGCACTGAGGGCATGATTGTTGACCCGGAAACCGGCGAGGCTCTTCCCGTGAACCGGACCGGAGAACTTTGGCTTAGAGGGCCCACCGTAATGAAAGGGTACTTTGGTAACACGGAGGCCACAACCTCAACACTTGATTCAGAGGGATGGTTGAGAACCGGTGATCTGTGTTATATTGATGAAGATGGTTTTATTTTTGTAGTTGATAGGCTGAAGGAACTAATCAAATATAAGGGATACCAGGTGCCTCCTGCTGAATTAGAGGCGTTGTTGCTTGCTCATCCTAATATCTCCGATGCAGCTGTGATTCCATATCCAGACAAAGAGGTTGGACAGTATCCGATGGCTTATGTGGTAAGGAAGGGTGGAAGCGACATTTCACATGAAGATGTAATGCAATTTGTGGCAAAACAGGTGGCGCCGTACAAAAGAATCCGGCGGGTGGCGTTCGTGGGTTCCATTCCCAAGAATCCGTCCGGCAAGATTCTTAGAAAGGATCTCATAAAGCTCGCAACCTCCAAACTCTGA 1653 50.51 MADYGGHNLEVDPRSGFCKSTKIFHSKRRPIPLPPNQSLDATTFISSRPHNGKIALIDATTGQQITYSHLWNSVDAVASSLSDMGIRKGHVILLLSPNSIYFPIICLAVMSIGAVITTTNPLNTPQEIAKQIADSKPILAFTTQQLIPKIAASKLPIVIIDGQVPKSPVKIVSTLSEMMREKPSESRIKERVEQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFKLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIDKYKATYLPLVPPILVALVNAADQIKGKYDLGSLHTALSGGAPLGKEVIEGFVEKYPNVAILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEGMIVDPETGEALPVNRTGELWLRGPTVMKGYFGNTEATTSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLAHPNISDAAVIPYPDKEVGQYPMAYVVRKGGSDISHEDVMQFVAKQVAPYKRIRRVAFVGSIPKNPSGKILRKDLIKLATSKL 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28243029 28248549 + CrPI670011_05g016840.1 Cre05g1684 498197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1684 550 Gene3D - 448 549 IPR045851 -
Cre05g1684 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 25 447 - -
Cre05g1684 550 Pfam AMP-binding enzyme 50 410 IPR000873 -
Cre05g1684 550 SUPERFAMILY Acetyl-CoA synthetase-like 44 548 - -
Cre05g1684 550 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Cre05g1684 550 FunFam 4-coumarate--CoA ligase 2 448 549 - -
Cre05g1684 550 CDD 4CL 33 542 - -
Cre05g1684 550 Gene3D - 21 447 IPR042099 -
Cre05g1684 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 17 542 - GO:0005777(PANTHER)|GO:0016405(PANTHER)
Cre05g1684 550 Pfam AMP-binding enzyme C-terminal domain 461 536 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0655 Cre-Chr3:5447969 Cre05g1684 Cre-Chr5:28243029 1.60E-134 dispersed
Cre03g0656 Cre-Chr3:5457704 Cre05g1684 Cre-Chr5:28243029 5.60E-135 dispersed
Cre05g1684 Cre-Chr5:28243029 Cre05g2316 Cre-Chr5:34722561 9.50E-127 dispersed
Cre05g1684 Cre-Chr5:28243029 Cre10g1429 Cre-Chr10:27987157 6.20E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1684 K10526 - csv:101221396 1003.43