Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1696 ATGGCTATGGATGATACCGAGAGCTGTAGTAGTAGACCGGCGGATGATTTTTTGGCTCAGACTTGGAGACAGAAGCAGAAGGTTGGTGTTTACGACGAAGTTCTTCGTCGACTCAGGCTGTCGCACGAAGCGGAGACCAGCCTTCCTGGTTTCGAGGATGAACTTTGGACTCATTTTCATCGACTTCCTGCTAGGTATGCTATGGACGTCAACGTAGAGAGGGCTGAAGATGTTCTCATGCACAAAAATCTTCTCTACATGGCACATGATCCTGCTACTCGACCAGCTATTGATGTCCGTCTCGTACAGGTTCATTCATCTCCTGGTAGAAACTTTGGCAAGTCCGTTCATTCAAACTTGAAGGAAAAAGTGAACCAGCGGTTTTCTGGTTATGACAGCAATCAGAGACATCACCCCCCACCAGCATTTGGTTCAACAACAGAGATCGAATATAGTTTTGAGACCAACCAATTACATGAAATAGACCAACCTGGCACTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAACTGCTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCACATGCTTTTTCAACAACAGATGGCTTTTCCTTGGATGTTTTTGTAGTTGATGGTTGGGCAATTGAGGATACCAAGCAGCTAAAAGATATACTTGCAGAAGAAATATCAAAGATTCAGAAAAGGCATCCTCTATTTACACCTTGCATCTTCCGTACTGGGAAGCAAGACAAAATTGGAATCCAGTTCTTCACAAAGTATGTCAACATTCCGAGGGACGAAGTTGATGAATGGGAAATTGATGCAACCCTGCTAGTCTTTGAGAAGAAAATTGCGTCTGGATCTCTTAGTGACTTGTATAAAGGCACCTTCTATGGTCAAGATGTGGCTATTAAGGTTCTAAAAGATGAAAACTTGAACGAGACTGTACGGCAGGAATTTGCTCAAGAAATTCATATCATGAGAAAACTTCGGCATAAGAATGTTGTCCAATTTATTGGTGCATCTACCAGGCCTCCACACTTTTTCATTGTTACAGAATACATGTCTGGTGGAAGCATACACGACTTTTTACATCAACAAAAGGGCGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAGTTGACGTGTCCAAGGGAATGAACTATTTGCATCAAAAGAATATCATTCATAGAGATCTGAAAGCTGCAAATCTTTTGATGGATGAAGATGGGGTTGTCAAGGTAGCTGATTTTGGTGTTGCTAGAGTGCAAGCTCAATCTGGTGTGATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCAGAGGTTATTGAGCACAAACCATATGATCGTAAAGCTGATGTTTATAGCTTTGGGATAGTGTTGTGGGAGCTGCTTACAGGACAGCTGCCTTATGAGAACTTGACTCCGTTACAAGCAGCAATTGGCGTGGTCCAGAAGGGTCTGAGGCCTAAGATTCCGAGGTATGCTCATCCAATGATCGTGGATTTGCTCAAGAAATGCTGGCTGCAGGATCCATCTTTGAGACCCGAATTCTCAGAAATTACGAGACTTCTACAGCAGACATTGCTGAAGGAGGCACTTCACGTTCCTGGAACAGATTATATAATAAGAAACTTGGGAGTGACAGGTACCATCTGGAAGATGATAAAAAAATTTGGGCTGGAGAGGACGTTCTATGGAGGAGCAAGGATACGAACTCACCATGAGCTGTCAACCACTATTGCTACTACGTCGACCCCTCGGCACGCGCCGGAATCCACGTCAGCCTATATTGCGACCTACGGCTACAACCCAACCTTTGATAGTGCCTTCTCCTTAACAATCTTTGGTACAACCCAAGCTGAAGAAACTCTGAAATAA 1911 43.49 MAMDDTESCSSRPADDFLAQTWRQKQKVGVYDEVLRRLRLSHEAETSLPGFEDELWTHFHRLPARYAMDVNVERAEDVLMHKNLLYMAHDPATRPAIDVRLVQVHSSPGRNFGKSVHSNLKEKVNQRFSGYDSNQRHHPPPAFGSTTEIEYSFETNQLHEIDQPGTFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWAIEDTKQLKDILAEEISKIQKRHPLFTPCIFRTGKQDKIGIQFFTKYVNIPRDEVDEWEIDATLLVFEKKIASGSLSDLYKGTFYGQDVAIKVLKDENLNETVRQEFAQEIHIMRKLRHKNVVQFIGASTRPPHFFIVTEYMSGGSIHDFLHQQKGVLSFPSLLRVAVDVSKGMNYLHQKNIIHRDLKAANLLMDEDGVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDRKADVYSFGIVLWELLTGQLPYENLTPLQAAIGVVQKGLRPKIPRYAHPMIVDLLKKCWLQDPSLRPEFSEITRLLQQTLLKEALHVPGTDYIIRNLGVTGTIWKMIKKFGLERTFYGGARIRTHHELSTTIATTSTPRHAPESTSAYIATYGYNPTFDSAFSLTIFGTTQAEETLK 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28465568 28473389 - CrPI670011_05g016960.1 Cre05g1696 498209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1696 636 Coils Coil 223 243 - -
Cre05g1696 636 ProSiteProfiles Protein kinase domain profile. 286 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1696 636 SMART serkin_6 286 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1696 636 SUPERFAMILY Protein kinase-like (PK-like) 266 534 IPR011009 -
Cre05g1696 636 CDD STKc_MAP3K-like 292 535 - -
Cre05g1696 636 Gene3D Transferase(Phosphotransferase) domain 1 365 548 - -
Cre05g1696 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1696 636 PANTHER SERINE-THREONINE PROTEIN KINASE 159 539 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cre05g1696 636 Gene3D - 171 244 - -
Cre05g1696 636 FunFam Serine/threonine-protein kinase isoform 1 276 364 - -
Cre05g1696 636 PRINTS Tyrosine kinase catalytic domain signature 506 528 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1696 636 PRINTS Tyrosine kinase catalytic domain signature 397 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1696 636 PRINTS Tyrosine kinase catalytic domain signature 360 373 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1696 636 PRINTS Tyrosine kinase catalytic domain signature 462 484 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1696 636 PRINTS Tyrosine kinase catalytic domain signature 443 453 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1696 636 ProSiteProfiles ACT domain profile. 173 249 IPR002912 -
Cre05g1696 636 Pfam Protein tyrosine and serine/threonine kinase 287 534 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1696 636 SUPERFAMILY ACT-like 171 238 IPR045865 -
Cre05g1696 636 Gene3D Phosphorylase Kinase; domain 1 273 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0191 Cre-Chr5:1912262 Cre05g1696 Cre-Chr5:28465568 1.40E-26 dispersed
Cre05g0591 Cre-Chr5:5258105 Cre05g1696 Cre-Chr5:28465568 2.70E-19 dispersed
Cre05g1696 Cre-Chr5:28465568 Cre10g0303 Cre-Chr10:1911369 3.50E-181 dispersed
Cre08g0444 Cre-Chr8:15230726 Cre05g1696 Cre-Chr5:28465568 8.20E-11 dispersed
Cre09g2309 Cre-Chr9:42375200 Cre05g1696 Cre-Chr5:28465568 4.60E-25 dispersed
Cre05g1696 Cre-Chr5:28465568 Cre04g1775 Cre-Chr4:35707722 7.50E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64151 PF07714 PK_Tyr_Ser-Thr 4.40E-72 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1696 - - - 0.0