Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1707 ATGAAGGATGGAACTCGAGCTCTGACCAACGGTACCTCTTACAGATCTTCTTCCAGATTTTCCTCTCTTTTGGCTTCTCCAGATCGTGACTATCTTCTCTCTCCCACCGGAGCTCAGGTCAAAGTGTCAAATCTCGACGGCAAGGTTCTGGGTCTTTACTTCTCTGCCAACTGGTATCCGCCGTGCCGGACCTTCAACAAGATTCTGGTCCGAACCTACGAGGAGCTTAAAGATAATGGGTCGAACTTTGAAGTGGTTTATGTGTCCTCCGATGAGGATTCCGACGCCTTCAATGAGTACCATGCGAGTATGCCGTGGCCGGCGATTCCGTTCTCTGACTTAGAAACCAAAATTGCTTTGAACAGGAAATTTGAGATTGAAGGTATTCCGTGTTTGATTATATTGCAGCCGCGTGATAATAAAGATGAAACGACGACGTTGCATGAAGGAGTGGAGGTTGTTTACCGTTATGGGGTGGATGCATTTCCATTTACAAAGGAGAGAATGGAGCAGTTGAAGGAGGAGGATAGACAAAAGGAAGAAAATCAGACTTTGTTCACTTTGCTAATCAATGACAATAGAGATTATCTCTTGGGTCATCCTGTCCCTAAACAGGTGCCTGTTGTTTCATTAGTAGGTAAGACCGTGGGGCTCTACTTCTCGGCGAAATGGTGTCTTCCCGGTATGTTCACGCCAAAGCTGATTTCAGTGTACAACAAGATAAAGCAAATGGTAGAGACGAAAGAAGACGAAGATTTTGAGATTGTTTTCGTGTCAAGTGATCGAGATGAAGACTCGTTCCGTTCTTACTTCGGTTCGATGCCATGGCTAGCATTGCCATTTGGAGACCCAATGGTTAAAGTACTTGCCAAACATTTTGACGTGCAAGGCATCCCTTGCTTGATAATCTTAGGTCCAAATGGCAAAACAGTCACCAAACAGGGTAGAAATCTTATAAACTTGTACAGGGAAAACGCTTATCCGTTCACGGGAGCAAGATTGGAGGAGTTGGTGAAAGAAATGGAGGAAGAGGCGAAAAAGCTTCCAACATCGGTACGCCATGTTGGGCATAGACACGAGCTGAATTTGGTATCTGAAGGAAATGGGGGAGGACCTTTCATCTGCTGCGAGTGTGATGAGCAGGGTTGTGGATGGGCGTATCAGTGCCTCAAATGTGGATTCGAGGTGCATCCAAAGTGTGTCGAGATGAGCAACCGCAACTCTCCCGTTAATGGAAGTGTTGAATATGAATCCTGGTCCATCTAA 1266 45.73 MKDGTRALTNGTSYRSSSRFSSLLASPDRDYLLSPTGAQVKVSNLDGKVLGLYFSANWYPPCRTFNKILVRTYEELKDNGSNFEVVYVSSDEDSDAFNEYHASMPWPAIPFSDLETKIALNRKFEIEGIPCLIILQPRDNKDETTTLHEGVEVVYRYGVDAFPFTKERMEQLKEEDRQKEENQTLFTLLINDNRDYLLGHPVPKQVPVVSLVGKTVGLYFSAKWCLPGMFTPKLISVYNKIKQMVETKEDEDFEIVFVSSDRDEDSFRSYFGSMPWLALPFGDPMVKVLAKHFDVQGIPCLIILGPNGKTVTKQGRNLINLYRENAYPFTGARLEELVKEMEEEAKKLPTSVRHVGHRHELNLVSEGNGGGPFICCECDEQGCGWAYQCLKCGFEVHPKCVEMSNRNSPVNGSVEYESWSI 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28576218 28585741 - CrPI670011_05g017070.1 Cre05g1707 498220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1707 421 SUPERFAMILY Thioredoxin-like 204 313 IPR036249 -
Cre05g1707 421 SUPERFAMILY Cysteine-rich domain 345 403 IPR046349 -
Cre05g1707 421 PANTHER THIOREDOXIN 18 388 IPR052259 -
Cre05g1707 421 ProSiteProfiles Thioredoxin domain profile. 22 174 IPR013766 -
Cre05g1707 421 SUPERFAMILY Thioredoxin-like 32 138 IPR036249 -
Cre05g1707 421 Gene3D Glutaredoxin 24 166 - -
Cre05g1707 421 Gene3D Glutaredoxin 195 330 - -
Cre05g1707 421 Pfam Thioredoxin-like 47 138 IPR012336 -
Cre05g1707 421 Pfam Thioredoxin-like 213 309 IPR012336 -
Cre05g1707 421 ProSiteProfiles Thioredoxin domain profile. 196 343 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1707 K17609 - - csv:101212204 740.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1707 Cre-Chr5:28576218 Cre08g0130 Cre-Chr8:2792900 2.90E-91 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g172 . Blo12g00875 . . . Bpe04g00258 Bma04g00259 . . . . Cma09g00088 . . . Cpe06g00051 . . . . . . . . . . . . . . . . . . . Lsi04g01774 . Chy04g00395 . . . . . . . . . . . Cmo09g00086 . . . Car09g00076 . . . . . . . . . Cla05g01601 Cam05g1712 Cec05g1712 Cco05g1769 Clacu05g1699 Cmu05g1588 Cre05g1707 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012145 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30