Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre05g1713 | ATGGCTCAAACCACGCCCAATCACACTCAGACAGTCTCCGGTTGGGCAGCCCATGATTCTTCCGGCAAGATCAGTCCGTATACTTTCAAACGCAGAGAAAACGGCCCCGAGGACGTGACGATAGAGATTTTGTACTGTGGAATATGCCATACCGATATTCACTACGCCAGAAACGAGTGGGGCATCACCATGTATCCTGTAGTTCCCGGGCATGAGATGACAGGGGTAATCACGAAAGTGGGAAGCAACGTGAAGAAGTTCAAAATAGGGGACAGAGTGGGGGTTGGTTGTATAGCTGCTTCCTGTTTGAACTGCGAGTTTTGTCAAGATTCCCAAGAAAACTACTGTGAGAATTTGCAGTTTACATACAACGGAATCTTCTGGGATGGGAGCATAACTTACGGGGGATACTCCAAAATGTTTGTTTCAGATCAGAGGTACGTGGTGCACATACCTGAAAGCCTGCCAATGGACGCAGCGGCGCCGTTGCTGTGTGCCGGAATAACAGTGTTCACGCCGATGAAAGATCTCGGCCTGATCGAGTCGGCGAGAAAGAAGGTGGGAGTGGTGGGGCTTGGAGGTCTGGGCCACATAGCAGTAAAATTTGCAAAGGCGTTTGGACACCATGTGACTGTGATCAGCACCTCTGCTTCAAAGGAACAAGAAGCTAAGGAGCGGCTTGGCGCTGACGATTTCATAGTCAGTAAAGATCCTGAGCAAATGCAGAGTTATAAGAGGACGTTGGATTTCATATTGGACACAGTGTCGGCGCAGCACTGTATTGGACCAATCTTAGAACTGCTAAAAGTGAATGGGACATTGTCCATTGTGGGTGCTCCAGACAAGCCCATTCAATTGCCCTCTTTTCCTTTAATATTTGGGAAGAGGACAGTGAAGGGAAGCATAATAGGTGGAATACAAGAGACACAAGAGATGATGGATTTGTGTGGGAAATACAAAATTACAAGTGATATTGAAGTGATTAAGCCAGAAGATATCAACCATGCTATGGAACGTCTTCTCAAAAGCGATGTTCGATATCGATTTGTCATTGACATTGCCCAAAACATCATCCAATAA | 1080 | 46.57 | MAQTTPNHTQTVSGWAAHDSSGKISPYTFKRRENGPEDVTIEILYCGICHTDIHYARNEWGITMYPVVPGHEMTGVITKVGSNVKKFKIGDRVGVGCIAASCLNCEFCQDSQENYCENLQFTYNGIFWDGSITYGGYSKMFVSDQRYVVHIPESLPMDAAAPLLCAGITVFTPMKDLGLIESARKKVGVVGLGGLGHIAVKFAKAFGHHVTVISTSASKEQEAKERLGADDFIVSKDPEQMQSYKRTLDFILDTVSAQHCIGPILELLKVNGTLSIVGAPDKPIQLPSFPLIFGKRTVKGSIIGGIQETQEMMDLCGKYKITSDIEVIKPEDINHAMERLLKSDVRYRFVIDIAQNIIQ | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 28837171 | 28839672 | - | CrPI670011_05g017130.1 | Cre05g1713 | 498226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre05g1713 | 359 | Pfam | Alcohol dehydrogenase GroES-like domain | 35 | 153 | IPR013154 | - | |
| Cre05g1713 | 359 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 70 | 84 | IPR002328 | GO:0008270(InterPro)|GO:0016491(InterPro) | |
| Cre05g1713 | 359 | PANTHER | ALDEHYDE REDUCTASE | 7 | 355 | IPR047109 | GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER) | |
| Cre05g1713 | 359 | Gene3D | - | 15 | 353 | - | - | |
| Cre05g1713 | 359 | FunFam | probable cinnamyl alcohol dehydrogenase | 15 | 176 | - | - | |
| Cre05g1713 | 359 | Pfam | Zinc-binding dehydrogenase | 194 | 316 | IPR013149 | - | |
| Cre05g1713 | 359 | SUPERFAMILY | GroES-like | 17 | 181 | IPR011032 | - | |
| Cre05g1713 | 359 | Gene3D | - | 166 | 323 | - | - | |
| Cre05g1713 | 359 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 155 | 321 | IPR036291 | - | |
| Cre05g1713 | 359 | FunFam | Cinnamyl alcohol dehydrogenase | 166 | 323 | - | - | |
| Cre05g1713 | 359 | SMART | PKS_ER_names_mod | 22 | 351 | IPR020843 | GO:0016491(InterPro) | |
| Cre05g1713 | 359 | CDD | CAD1 | 14 | 352 | IPR047109 | GO:0016616(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre04g1444 | Cre-Chr4:33261193 | Cre05g1713 | Cre-Chr5:28837171 | 1.00E-121 | dispersed | |
| Cre05g1713 | Cre-Chr5:28837171 | Cre09g2383 | Cre-Chr9:43189784 | 4.50E-93 | dispersed | |
| Cre05g1713 | Cre-Chr5:28837171 | Cre05g1206 | Cre-Chr5:11711350 | 1.10E-99 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre05g1713 | K00083 | - | csv:101213170 | 672.93 |