Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1731 ATGGATGTGAACGGCAATAAACCTTTGAAATCTGTTCAAAGAAGTTCTTCTCAGAAGGAAAGTGAAAATGGAGGCCAAGTTGTGGTTGAAATTAGCAGCGTTGTTTCTTCCAAAGAAACCAGAGATGAAAATGGCTACTCTGTACCGAAGCCAAACAGAGTCGGTTCGCAGGCCACAGAGCCGACCGATTTGAGCATCCCCAGTTCAAATGGAACCCTCACGCACAGAAGATCTCTCAAAAGATCAATCCTGTCAAGACCCAAATCAAGATTTGGGGAACAGCCACGTTACATCGATTCAGATATGTTTGAGGAGAATCATTCGTCGTTGAGAGAACAAATCGGTGCAACTTCATCCAGAAGATCTGCTCTGGCCCAAACTGAGAAAGAAGATGATGAGGGAATCGTCAAGATAGAGCCGTTGGACAAAAAGCACAAGAAAGTGAAGGTGAAGACATTGATTAAGTTAGTTGGAGTTTTTTGCATAATTGGTTGCTTGGTGGCTAGTTTGACTGTTAACCGTTTGAAGAATCGCTTCTTTTGGGGATTGAGGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTGTGCATATTGTTGTCAGTTTGATTGAGGGGAACTTTTTGCTTAAGAAAAAAGTGCTTTATTTTGTTCATGGATTGAAGAAGAGTGTCCAAGTGACCATTTGGTTGGCATTGGTTCTTGTAACATGGGTGTCCCTGTTCGATCGGAGAAACCATAGGAATTCTAATTTTGGAATCACTGGGAAGATTTTGGATACTATTACATTGACTCTGGTAGCCCTTCTTGTAGGGACATTCCTGTGGTTGATAAAAACATTGTTGTTGAAAATACTGGCCTCCAAGTTCCATAAGAACCAATTTTTCGACAGAATTCAGGAATCCCTTTTCCATCATCATGTTCTACAAACCCTCTCGAAGTCTCCATTAATGGAGGGGGATGGAAGTACTGCCAAGTTCAGCTGTTGTCAATTTACTTTGGAGAGTAAAAAATCAGAACATAAGAAGGTGATTGACATGGGAAAGATTCACCAGCTGCAGCGAGAGAAGGTAACTGCTTGGACAATGAAGGTGTTGATCGAGGCAGTTACAAGTTCGGAGATGTCGATCTCACAAATGCTCGATGAAAGCTACCACAATGTTGCTGATGGTGAGATCACTGATGAAATGGAAATTGCCAGTGCCGTTGCCTGCAAAATCTTACAAAATGTTGCTCTTGGAAAAAAGTTCATACAAGAAGAGGATCTTATGAAATTCATGGTCAAAGAAGAAATTGATCTTGTATTACCACACTTTGAGGTAGATGAGACAAGGAAGATTGATGAGAAAGCTCTAAGAAAATGGGTGGTGAAGGTTTATCAAGAGAGGAAAACTCTAGCACATGCCTTGAATGACACTAAAACAGCTGTGAAGCAATTGAATAATTTGGTAACAGCGCTTCTTATAATAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACATCCAAAGTACTCGTTTTCCTTCTATCTCAACTTGCAGTTGCAGCTTTCATGTTTGGAAACTCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTTGGGGACCGTTGTGCCGTCGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACGACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACCAAGCCCATCACTAACTACTACAGAAGTCCATACATGAGCGACACAATCGAATTCTCGATCGGTTTCACGACACCACTAGAGAGGATTGGAGCCATGAAAGAGAGAATAAAAAGGTATTTGGAGAAGAATCCACAACACTGGTATCCAAATCATAGTGTGGTGGTTAAAGAGATCGAAAACGTGAATAAGATTAAGATCGCTCTTTATACGAATCACACGATGAATTTTCAAGACTGGAGTGAGAAGAACCGACGAAGATCCGAGCTCTTGATGGAGCTGAAGAAAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTTCATCTCTTTCCAGTTCAGGAGCAGTAA 2139 40.86 MDVNGNKPLKSVQRSSSQKESENGGQVVVEISSVVSSKETRDENGYSVPKPNRVGSQATEPTDLSIPSSNGTLTHRRSLKRSILSRPKSRFGEQPRYIDSDMFEENHSSLREQIGATSSRRSALAQTEKEDDEGIVKIEPLDKKHKKVKVKTLIKLVGVFCIIGCLVASLTVNRLKNRFFWGLRVWKWCLLATVILCGMIFTHWVVHIVVSLIEGNFLLKKKVLYFVHGLKKSVQVTIWLALVLVTWVSLFDRRNHRNSNFGITGKILDTITLTLVALLVGTFLWLIKTLLLKILASKFHKNQFFDRIQESLFHHHVLQTLSKSPLMEGDGSTAKFSCCQFTLESKKSEHKKVIDMGKIHQLQREKVTAWTMKVLIEAVTSSEMSISQMLDESYHNVADGEITDEMEIASAVACKILQNVALGKKFIQEEDLMKFMVKEEIDLVLPHFEVDETRKIDEKALRKWVVKVYQERKTLAHALNDTKTAVKQLNNLVTALLIIVTAVIWLLLMEIATSKVLVFLLSQLAVAAFMFGNSCKTAFEALIFVFVMHPFDVGDRCAVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPYMSDTIEFSIGFTTPLERIGAMKERIKRYLEKNPQHWYPNHSVVVKEIENVNKIKIALYTNHTMNFQDWSEKNRRRSELLMELKKIFEELKINYNLLPQTVHLFPVQEQ 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29006684 29009538 + CrPI670011_05g017310.1 Cre05g1731 498244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1731 712 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 35 706 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Cre05g1731 712 FunFam Predicted mechanosensitive ion channel 550 599 - -
Cre05g1731 712 Gene3D - 550 599 IPR023408 -
Cre05g1731 712 MobiDBLite consensus disorder prediction 1 97 - -
Cre05g1731 712 SUPERFAMILY Sm-like ribonucleoproteins 539 599 IPR010920 -
Cre05g1731 712 MobiDBLite consensus disorder prediction 8 42 - -
Cre05g1731 712 MobiDBLite consensus disorder prediction 50 78 - -
Cre05g1731 712 PIRSF Memb_At2g17000 3 712 IPR016688 -
Cre05g1731 712 Pfam Mechanosensitive ion channel, beta-domain 543 600 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1731 Cre-Chr5:29006684 Cre06g1611 Cre-Chr6:11753732 2.20E-128 dispersed
Cre05g1731 Cre-Chr5:29006684 Cre05g1735 Cre-Chr5:29048443 4.00E-303 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1731 K22048 - csv:101216955 1046.96