Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1739 ATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGAAGAAGACGAAAGGGAAAGGGAAGAGGAACTGAAGAAGGAAGGTGAAATGAAACCCATGATGCGTGAGGAGGTTTTTGAGAACCAGGATGACTCTGATCGCATTGTGCGAAATGGTGATGATTCTCAAGGGAGTAATCCAGTTCCGATTGCTGTAGATGATGCGCCTGACCTTCATGACGGTGATCGACTTAGATTGTTTGAGGATATGGTCAGAGCAATGCGCGATGGCGCCGATGGTGGTGGTGCTCATTGGGACGATGAGCTGCGCGCCGGCGGCGGCGGCGGCGGCGGGGCTATTAATCCCTGGAATTTTTCTTTTGGAATTCTGCATCAATCTGAGGGAGGAGAAAGTAGTAGCGCCTCGGCTTTGTCCTTGTCTTCTACGGTGGAGACTTCTAATGAGGAACGCGATCGGGATGCCAACCATAAGCGCGCTAAAGTTCTCTCCAAATTCATTGAGAGCTCATTTGCAACTCCATGGCCTTTGGGTGCTGGAAATCCTATGAGAGATTATGATTTTATTCACGGATCATCTTCAATTATGAGTAGGAATGAATTTCTATACCATGCTTCTACATCAAGCAGAGTTGACGAAGATTTGGAATCTAGTTTTGGTAGGGATGATGGGATCAATGAGAATGACACCTGTAAATCAGAAGGATTTGAAGTAAGAATGGATCTTACAGATGATTTACTGCATATGGTTTTCTCTTTCTTGGATCACATCAATCTTTGTCGAGCTGCTATAGTCTGCAGGCAGTGGCAAGCTGCTAGTGCTCATGAAGATTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATGGAACAATTCGAGGATATGTGTGGAAGATATCCAAATGCCACAGAGGTCAATATCTCTGGTGTACCTGCCGTTCACTTGCTTGCCATGAAAGCAGTTTCTTCTTTAAGACATCTGGAGGTTTTAACTCTGGGGAGAGGACAACTGGCAGATAACTTTTTTCACGCCCTGACTGATTGCCATTTATTGAAGAGTTTGACTGTCAATGATTCTACGCTGGTTAATGTTACACAAGAGATACCTATAAGCCATGATAGACTGCGTCATCTTCATCTTACTAAATGTCGTGTTATACGCATATCTGTTAGATGTCCACAACTTGAAACATTGTCGTTGAAGCGCAGCAACATGGCACAGGCTGTTCTTAACTGCCCCCTTCTTCGGGACCTGGATATAGGCTCTTGCCACAAGCTCTCAGATGCTGCAATTCGCTCAGCCGCTATTTCATGCCCACAGTTGGAATCTCTTGATATGTCTAATTGTTCATGTGTTAGCGATGAGACATTACGTGAAATTTCTGCAAACTGCCCGAATCTCCAGCTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGACTGACAATGCTGACCGTGCTTAAGCTTCACAGCTGTGAGGGCATCACATCAGCTTCAATGACCGCAATATCTAGTAGTTCTGGTTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTTTTGACTTCTGTTTCTCTGGATCTTCCCCATTTACAGAATATCAGACTTGTCCATTGCCGCAAATTCTCGGACTTGAGTTTACAGAGTGTTAGATTATCATCCATAATGGTCTCTAATTGTCCATCACTTCACCGGATCAACATCACTTCCAATTTACTTCAAAAATTGGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAGTCTGCAAGATGTGGACCTCACAGACTGTGAATCACTAACGAATTCTATTTGTGAGGTTTTTAGTGATGGTGGTGGATGCCCTATGTTGAAATCACTTGTTCTTGATAACTGCGAGAGTCTGACTGCTGTTCGATTCTGTAGCAGTTCTTTAGGCAGTCTTTCCCTTGTTGGTTGCCGGGCAATCACTTCACTTGAACTTCAATGCCCTAATCTCGAACAGGTTTCTTTAGATGGCTGTGATCATCTTGAGAGAGCATCATTTTCCCCGGTTGGTCTGCGGTCACTAAACCTGGGAATCTGTCCCAAATTGAATGAATTAAAACTTGAGGCCCCTCGGATGGATTTACTTGAGTTAAAAGGTTGTGGTGGATTGTCTGAAGCAGCCATCAATTGTCCTCGTCTAACATCGTTGGATGCTTCCTTTTGTGGCCAACTGAAAGACGAGTGTTTGTCTGCGACTACTGCCTCCTGTCCACAGATTGAGTCGTTAATACTGATGTCATGTCCATCGGTTGGTTCAGAGGGGCTTTACTCTCTGCGATGCCTTCTGAAATTGGTTGTGCTTGATTTATCATATACCTTTTTGATGAGCTTGCAGCCAGTCTTCGAGTCTTGTATACAACTTAAGGTATTGAAACTACAAGCATGCAAGTATTTAACTGACTCATCGCTAGAGCCTCTTTATAAGGAAGACGCTCTTCCAGCTCTTCAAGAGTTAGACTTATCTTACGGGACTCTTTGTCAGTCTGCCATAGAAGAGCTTCTTGCTTGTTGCACTCACTTAACTCATGTGAGCTTAAATGGGTGTGTGAACATGCATGATCTAAATTGGGGTTGTAGCATTGGACAGCTTTCGTTGTCCAGCATCCCAATTCCTCTTGGTCAGGCCACTCTTGATGAGATTGAGGAACCAGTTGCACAGCCAAACCGTTTGTTACAGAACCTTAACTGTGTAGGTTGTCAGAATATTAGAAAGGTTCTCATTCCTCCAGCTGCTCGTTGTTTTCATTTATCATCATTAAACCTATCCTTGTCTTCAAATCTCAAGGAAGTTGACGTCTCTTGTTACAACCTATGCTTTCTTAATTTGAGTAATTGCTGCTCTTTGGAAGTTCTAAAACTTGACTGCCCGCGGTTAACCAGTCTCTTTCTTCAGTCTTGCAACATTGAAGAAGAAGTGGTTGTGGCTGCGGTATCGAGATGTAGCATGCTCGAGACGTTGGATGTCCGCTTATGTCCAAAGATCTCCTCTATTAGCATGGTACAACTGCGTATTGCTTGTCCAAGTTTGAAGCGGATCTTCAGCACCGATTTGTTTGGTTTGGGCCCTGAAGAAGCCTTCCAGTTTGTGGTTACTGGCTGTCTCTCACTCAGCCAATTCAATGGCCGCTGCCCTTTGAGTGAAACACAAGTCTCTCCATCGCTTGAATCTCACTTTTTCTTCATTTCTTAA 3240 43.86 MTIWCCLCFTVGEEDEREREEELKKEGEMKPMMREEVFENQDDSDRIVRNGDDSQGSNPVPIAVDDAPDLHDGDRLRLFEDMVRAMRDGADGGGAHWDDELRAGGGGGGGAINPWNFSFGILHQSEGGESSSASALSLSSTVETSNEERDRDANHKRAKVLSKFIESSFATPWPLGAGNPMRDYDFIHGSSSIMSRNEFLYHASTSSRVDEDLESSFGRDDGINENDTCKSEGFEVRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWQAASAHEDFWRCLNFENRNISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVSSLRHLEVLTLGRGQLADNFFHALTDCHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAQAVLNCPLLRDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREISANCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSSSGLKVLELDNCSLLTSVSLDLPHLQNIRLVHCRKFSDLSLQSVRLSSIMVSNCPSLHRINITSNLLQKLVLKKQESLAKLVLQCPSLQDVDLTDCESLTNSICEVFSDGGGCPMLKSLVLDNCESLTAVRFCSSSLGSLSLVGCRAITSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELKLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASFCGQLKDECLSATTASCPQIESLILMSCPSVGSEGLYSLRCLLKLVVLDLSYTFLMSLQPVFESCIQLKVLKLQACKYLTDSSLEPLYKEDALPALQELDLSYGTLCQSAIEELLACCTHLTHVSLNGCVNMHDLNWGCSIGQLSLSSIPIPLGQATLDEIEEPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSSNLKEVDVSCYNLCFLNLSNCCSLEVLKLDCPRLTSLFLQSCNIEEEVVVAAVSRCSMLETLDVRLCPKISSISMVQLRIACPSLKRIFSTDLFGLGPEEAFQFVVTGCLSLSQFNGRCPLSETQVSPSLESHFFFIS 1079
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29108159 29116032 + CrPI670011_05g017390.1 Cre05g1739 498252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1739 1079 MobiDBLite consensus disorder prediction 16 50 - -
Cre05g1739 1079 SUPERFAMILY L domain-like 409 768 - -
Cre05g1739 1079 SUPERFAMILY RNI-like 260 480 - -
Cre05g1739 1079 CDD F-box_FBXO41 242 278 - -
Cre05g1739 1079 FunFam F-box/LRR-repeat protein 15 794 879 - -
Cre05g1739 1079 Gene3D Ribonuclease Inhibitor 794 1068 IPR032675 -
Cre05g1739 1079 Gene3D Ribonuclease Inhibitor 234 484 IPR032675 -
Cre05g1739 1079 Gene3D Ribonuclease Inhibitor 485 654 IPR032675 -
Cre05g1739 1079 FunFam F-box/LRR-repeat protein 15 232 482 - -
Cre05g1739 1079 SMART fbox_2 240 280 IPR001810 GO:0005515(InterPro)
Cre05g1739 1079 SMART LRR_CC_2 464 484 IPR006553 -
Cre05g1739 1079 SMART LRR_CC_2 727 752 IPR006553 -
Cre05g1739 1079 SMART LRR_CC_2 854 885 IPR006553 -
Cre05g1739 1079 SMART LRR_CC_2 997 1022 IPR006553 -
Cre05g1739 1079 SMART LRR_CC_2 412 437 IPR006553 -
Cre05g1739 1079 SMART LRR_CC_2 664 694 IPR006553 -
Cre05g1739 1079 SMART LRR_CC_2 801 826 IPR006553 -
Cre05g1739 1079 SMART LRR_CC_2 972 996 IPR006553 -
Cre05g1739 1079 SMART LRR_CC_2 485 510 IPR006553 -
Cre05g1739 1079 SMART LRR_CC_2 622 660 IPR006553 -
Cre05g1739 1079 SMART LRR_CC_2 594 619 IPR006553 -
Cre05g1739 1079 SMART LRR_CC_2 438 463 IPR006553 -
Cre05g1739 1079 SMART LRR_CC_2 531 556 IPR006553 -
Cre05g1739 1079 SMART LRR_CC_2 753 778 IPR006553 -
Cre05g1739 1079 SUPERFAMILY F-box domain 239 270 IPR036047 GO:0005515(InterPro)
Cre05g1739 1079 MobiDBLite consensus disorder prediction 128 143 - -
Cre05g1739 1079 SUPERFAMILY L domain-like 721 1032 - -
Cre05g1739 1079 MobiDBLite consensus disorder prediction 128 155 - -
Cre05g1739 1079 PANTHER OS10G0396666 PROTEIN 222 1030 - -
Cre05g1739 1079 MobiDBLite consensus disorder prediction 16 69 - -
Cre05g1739 1079 Pfam F-box-like 242 282 IPR001810 GO:0005515(InterPro)
Cre05g1739 1079 Gene3D Ribonuclease Inhibitor 714 793 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1739 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42