Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1743 ATGCAACGAAATAACAGAATAGCGTCCTTGTCAGCAACACCCAAATGGGTTTCTTCCATTACCCATCTCTGCAACCAAAGAAAGCGACCCCTTGTTACTGAGAGCTTGCATTTGCAAATTTGCAACCAGAAACGAAGAGAGAGAGAAAAAGGAAATGGGTTTAAGGGTTGCTGTGTGATGTTGCAGGTTCTTGTTACTAACCAGCCATGGAAAGTGCAACAATGTAAGATGAAGTCTGTGAAGAGGGCAGCAATGGCACTTCCTGTTGAGCTTGTTGTTTTGGCTTTTCTCTTCTGTGCTACCGTTGGTGTGGTGAACTCTGATGATGGAGCAACGTTGTTGGAAATAAAGAAATCATTCAGGGATGTGGATAATGTTCTTTATGATTGGACGAGCTCACCTTCGTCAGACTACTGTATGTGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGTTATCTCTCTTAATCTTTCAGGTCTCAATTTGGATGGGGAAATTTCTCCTGCAGTCGGGAACCTCAAGGGCCTGCAAACTTTGGATTTGAGGGGGAATAGTCTTTCTGGGCAAATTCCAGATGAGATTGGGGATTGCTTTTCGTTAATAAATCTGGATTTGTCGTTTAATGAGATTTATGGAGACATACCATTTTCCATTTCGAAGTTGAAGCAACTGGAAATGCTTGTTCTGAAAAATAATCGACTGATTGGGCCGATCCCATCTACTTTATCTCAGATTCCAAACTTGAAGGTCTTGGATCTGGCACAGAATAATCTTAGTGGGGAAATACCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTAGGTTTGCGTGGCAACAATTTGGTGGGCACACTATCTCCAGATATGTGTCAACTGACTGGTTTATGGTATTTCGATGTGAGAAACAACAGTTTAACTGGCGGCATACCCCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTGGACTTGTCATACAATCATCTCACTGGAGAGATACCATTCAACATTGGTTTCCTTCAAGTAGCCACATTGTCCTTACAGGGTAATCAGCTATCAGGCCCCATTCCACCCGTAATTGGTCTGATGCAGGCGCTTGCTGTGCTAGATTTGAGTTGCAACATGTTAACTGGTCCAATCCCCTCTATCTTAGGGAATCTGACTTATACCGAGAAGCTGTACTTGCATAGTAACAAGCTCACTGGGCCCATTCCAGCAGAGCTTGGGAATATGACGAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGAATATTCCAGCTGAGCTTGGAAAACTCACTGATTTATTCGATCTAAATGTTGCTAATAACAATCTCGGAGGGCCTATCCCTGACAATCTTAGCTCTTGCACAAATCTCAACAGCCTAAATGTGCATGGCAACAAGTTGAATGGAACTATTCCCCCGTCTTTCCAGAGGCTAGAGAGTATGACTTACTTGAATCTCTCCACGAATGATCTACAAGGTCCTATTCCAGTCGAGCTGTCTCGTATTGGCAATTTGGATACGTTAGACATTTCAAATAACAAAATTAGTGGCACAATTTCTTCCTCCTTCGGTGATCTGGAACATCTGCTAAAGCTAAATTTAAGTAGGAATCATTTGACGGGATTTATTCCAGCTGAATTTGGCAATCTAAGAAGTGTAATGGAAATAGATATTTCACACAACCAGCTCTCTGGGTTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTTCTCTCCTTGAGACTTGAAAACAACAATTTATCTGGGGACCTGACGTCGCTGATTAGCTGCCTAAGTCTTACTGAATTAAATGTATCTTATAACAATCTAGCTGGTGAGATTCCGACAAGCAACAACTTCTCTAGATTTTCATCTAACAGTTTCCTTGGAAATCTTGCCCTCTGTGGATATTGGAATAGCAACAACTATCCCTGCCATGAACCTGATACGACAGAGCGAGTGACCATATCTAAAGCTGCTATCCTGGGAATTGCTCTCGGTGCCCTTGTAATCCTTCTAATGATCCTTCTAACAGTGTGCCGTCCAAACAACACAATACCTTTTCCAGATGGATCACTTGACAAACCAGTTACGTACTCCACTCCCAAGCTAGTGATCCTTCACATGAACATGGCCCTTCACGTTTATGAGGATATTATGAGGATGACTGAAAATTTGAACGAAAAGTACATTATTGGACATGGAGCTTCAAGCACAGTCTACAAGTGTGTACTGAAGAATTGTAAACCTGTGGCTGTCAAAAAGCTCTTTTCCCACCAGCCCCATAGCATGAAGGGATTCGAGACCGAACTGGAAACCGTGGGTAGCATCAAGCACAGAAATCTAGTAAGCCTCCAAGGATACTCCTTATCCCCCTCTGGGAATCTCCTCTTCTATGAATACATGGAAAATGGCAGTCTTTGGGATCATCTACATGGGTCTAGCTCTACCAAGAAGAAAAAGCTTGACTGGGACACTCGGCTCAATATTGCCCATGGAGCAGCCCAGGGACTATCATATCTACACCATGATTGTAGCCCTCGTATTATCCACAGGGATGTTAAGTCATCTAACATTTTATTAGACAAGGATTTTGAAGCCCATCTCACTGATTTTGGTATTGCCAAGAGCTTATGCACCTCGAAGACATATACATCCACTTATATCATGGGAACCATTGGATACATAGATCCAGAGTATGCTCGGACTTCTCGACTTACTGAAAAGTCCGATGTTTACAGCTTTGGCATTGTGTTACTTGAATTGCTCACAGGAAGGAAAGCTGTGGACAATGAATCAAATCTCCACCAATTGATCTTATCAAAAACAGCCAACAATGCTGTAATGGAGACGGTTGATGCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCATTTCAGCTGGCTCTCCTTTGCACCAAGAGGCAGCCATCCGACCGACCAACAATGCACGAAGTAACACGCGTCATTGCGAGTCTTCTGCCCTCCGCCACAACACTAAAGCAAACACCAACCATAACATCCATGCCCCCATCTGCAAAATCCCCTTGCTACAAGGATGAATATGCAAATCTAAAAACGCCGCACGTGCTGAACTGCCCAACCATGAGCACCTCAGATGCCCAGCTCTTCCTCAAGTTCGGAGAGGTAATATCACAAAACATGTACGGTTTGTCAATTTACTTTAACCAGGCAATGATTTCAGGGGTAATCAACTTGCCAATGGTTTGA 3264 43.08 MQRNNRIASLSATPKWVSSITHLCNQRKRPLVTESLHLQICNQKRREREKGNGFKGCCVMLQVLVTNQPWKVQQCKMKSVKRAAMALPVELVVLAFLFCATVGVVNSDDGATLLEIKKSFRDVDNVLYDWTSSPSSDYCMWRGVTCDNATLNVISLNLSGLNLDGEISPAVGNLKGLQTLDLRGNSLSGQIPDEIGDCFSLINLDLSFNEIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGGIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLTGPIPSILGNLTYTEKLYLHSNKLTGPIPAELGNMTKLHYLELNDNHLTGNIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSTNDLQGPIPVELSRIGNLDTLDISNNKISGTISSSFGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMEIDISHNQLSGFIPQELSQLQNLLSLRLENNNLSGDLTSLISCLSLTELNVSYNNLAGEIPTSNNFSRFSSNSFLGNLALCGYWNSNNYPCHEPDTTERVTISKAAILGIALGALVILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLNEKYIIGHGASSTVYKCVLKNCKPVAVKKLFSHQPHSMKGFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYEYMENGSLWDHLHGSSSTKKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKTANNAVMETVDAEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIASLLPSATTLKQTPTITSMPPSAKSPCYKDEYANLKTPHVLNCPTMSTSDAQLFLKFGEVISQNMYGLSIYFNQAMISGVINLPMV 1087
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29154824 29162858 + CrPI670011_05g017430.1 Cre05g1743 498256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1743 1087 Gene3D Transferase(Phosphotransferase) domain 1 809 1017 - -
Cre05g1743 1087 Gene3D Phosphorylase Kinase; domain 1 715 808 - -
Cre05g1743 1087 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 271 380 - -
Cre05g1743 1087 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 809 1012 - -
Cre05g1743 1087 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 409 1000 IPR051716 -
Cre05g1743 1087 ProSiteProfiles Leucine-rich repeat profile. 248 270 IPR001611 GO:0005515(InterPro)
Cre05g1743 1087 Gene3D Ribonuclease Inhibitor 106 269 IPR032675 -
Cre05g1743 1087 SUPERFAMILY L domain-like 343 633 - -
Cre05g1743 1087 ProSiteProfiles Protein kinase domain profile. 733 1005 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1743 1087 Gene3D Ribonuclease Inhibitor 344 653 IPR032675 -
Cre05g1743 1087 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 704 808 - -
Cre05g1743 1087 SUPERFAMILY L domain-like 133 384 - -
Cre05g1743 1087 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 106 270 - -
Cre05g1743 1087 ProSitePatterns Protein kinases ATP-binding region signature. 739 762 IPR017441 GO:0005524(InterPro)
Cre05g1743 1087 Pfam Leucine rich repeat N-terminal domain 107 147 IPR013210 -
Cre05g1743 1087 ProSitePatterns Serine/Threonine protein kinases active-site signature. 856 868 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1743 1087 CDD STKc_IRAK 739 1001 - -
Cre05g1743 1087 Pfam Leucine rich repeat 511 570 IPR001611 GO:0005515(InterPro)
Cre05g1743 1087 Pfam Leucine rich repeat 224 283 IPR001611 GO:0005515(InterPro)
Cre05g1743 1087 SUPERFAMILY Protein kinase-like (PK-like) 711 999 IPR011009 -
Cre05g1743 1087 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 381 654 - -
Cre05g1743 1087 SMART serkin_6 733 1005 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1743 1087 Gene3D Ribonuclease Inhibitor 270 343 IPR032675 -
Cre05g1743 1087 Pfam Protein kinase domain 735 998 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1743 1087 Pfam Leucine Rich Repeat 322 341 IPR001611 GO:0005515(InterPro)
Cre05g1743 1087 Pfam Leucine Rich Repeat 297 318 IPR001611 GO:0005515(InterPro)
Cre05g1743 1087 Pfam Leucine Rich Repeat 463 485 IPR001611 GO:0005515(InterPro)
Cre05g1743 1087 Pfam Leucine Rich Repeat 393 413 IPR001611 GO:0005515(InterPro)
Cre05g1743 1087 Pfam Leucine Rich Repeat 415 437 IPR001611 GO:0005515(InterPro)
Cre05g1743 1087 Pfam Leucine Rich Repeat 177 198 IPR001611 GO:0005515(InterPro)
Cre05g1743 1087 Pfam Leucine Rich Repeat 368 389 IPR001611 GO:0005515(InterPro)
Cre05g1743 1087 Pfam Leucine Rich Repeat 606 624 IPR001611 GO:0005515(InterPro)
Cre05g1743 1087 SMART LRR_typ_2 533 556 IPR003591 -
Cre05g1743 1087 SMART LRR_typ_2 174 198 IPR003591 -
Cre05g1743 1087 SMART LRR_typ_2 413 437 IPR003591 -
Cre05g1743 1087 SMART LRR_typ_2 246 270 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1743 Cre-Chr5:29154824 Cre09g1314 Cre-Chr9:19456941 4.90E-18 dispersed
Cre05g1743 Cre-Chr5:29154824 Cre06g1526 Cre-Chr6:10049482 1.50E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64154 PF00069 Pkinase 1.30E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1743 K20718 - csv:101214398 1848.56