Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1763 ATGGAATCGGAGGATTCAGTGAGATTAAGATTGGAGGAATTGCACAAAGACTTGGGGAAGAAACAGAGATTCGAGGAAGCAGTTTCCACCATTATTTCTCTGCTTCAAGATCGCTATCCTACTGCTTCTCCTTCATTACGCAAATCGTTCTATTCCGTAATTTGCCGAGTTGCAACAGTATTGAAGACGAGGTTTACGGCCCCAGGGTTTTGGCTTTCTGGTCTCAAGCTTTTTCAGTTTTCTTTGACTTTGCTCTCTGATCATTCAGAGAGACAACACCTGGAGGCTTGCCTAGCTCAGGCCAAGGAAATTCTGCACCAAATCGATAATCCATCTCCTGCTTCACAAAGTAATTCATCAAATGGAGGCTATCTTTTTGAGGGCCATCTCACTGTTGATCCAGAGCCACCCCAGCCCCAGTGGCTGGTGCAGTCAAACCTCTTGACAGCCGCTGCAGCTGCGCTATCTAATGCTGAATCTTCTCAAGGTCCAGCTGAGAACAGCAACACTTCTGAAAATGCTGCTAATATTCTTCAAGCGCTTATTGAAAATCTAGATAACGCTGTAGATGGGTTCATGGACTTGGAAATGGCTAGCGGACCGCCAAGAGTCCCTCCTGCAAGTAAAGAAGTCGTCGCAAAACTTCCTGTAATTACGATAACTGATGAAGTTCTTGCCAAGCTAGGAAGAGATGTACAATGTGCTATTTGCAGGGAAAACTTGGCTGTTGATGACAAGATGCAGGAATTGCCTTGCAAACACACATTCCACCCACCTTGTTTGAAGCCCTGGCTGGATGAGCATAACTCTTGTCCGATTTGTCGACATGAATTGCCCACCGACGACCACAAATACGAGAGCTGGAAGGAGCGAGAGAAAGAGGCCGAAGAAGAAAGAAAAGGAGCTGCAAATGCTGTTCGTGGTGGTGAATATATGTATATTTGA 945 45.61 MESEDSVRLRLEELHKDLGKKQRFEEAVSTIISLLQDRYPTASPSLRKSFYSVICRVATVLKTRFTAPGFWLSGLKLFQFSLTLLSDHSERQHLEACLAQAKEILHQIDNPSPASQSNSSNGGYLFEGHLTVDPEPPQPQWLVQSNLLTAAAAALSNAESSQGPAENSNTSENAANILQALIENLDNAVDGFMDLEMASGPPRVPPASKEVVAKLPVITITDEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHKYESWKEREKEAEEERKGAANAVRGGEYMYI 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29451949 29453892 - CrPI670011_05g017630.1 Cre05g1763 498276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1763 314 FunFam E3 ubiquitin-protein ligase RNF181 195 281 - -
Cre05g1763 314 Coils Coil 285 305 - -
Cre05g1763 314 Pfam Ring finger domain 233 275 IPR001841 -
Cre05g1763 314 SUPERFAMILY RING/U-box 228 281 - -
Cre05g1763 314 CDD RING-H2_RNF126-like 233 275 - -
Cre05g1763 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Cre05g1763 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 119 280 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cre05g1763 314 SMART ring_2 234 274 IPR001841 -
Cre05g1763 314 MobiDBLite consensus disorder prediction 109 130 - -
Cre05g1763 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 281 IPR013083 -
Cre05g1763 314 MobiDBLite consensus disorder prediction 109 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1763 Cre-Chr5:29451949 Cre09g1715 Cre-Chr9:35333034 2.40E-18 dispersed
Cre05g1763 Cre-Chr5:29451949 Cre09g0350 Cre-Chr9:3401002 5.20E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1763 K16274 - csv:101218065 433.721