Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1767 ATGGTCTGCGAGATGGAGACTGGTGTTATTGAAGATATGGACATCGAAGCGGTTCCTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACGATTGTTGATTTCAAGCGTCTTATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACAATATCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTTAAAGAAGAACTTGACATTCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTAAAAATATTAGAAGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAATCTTGTGATCTATGGCAAGATATTCCAAGTAGGAAAACTGATTTCGTCGTTCAAAGTAAGAGAGTCGAAATTGATGCAGAGTATGATACTGTGACATACTGGAAGCAACGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAGATGCTTGCAGAGAAGCTTAAGGAAAACATAAAAAATATTGAAAAGCAGTCCTCACCAGTTGAGGAGTTGTCCCAAATTCTTAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTGGTTTTTGGTCATCAGGACAAAGAGTTGCGCTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTCAGTGGTGCTGGTGTTAAGGAATCTCAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTACCTGCAAAGAGGGAGATTCAGTTTGATACCGAATTATTTGGGCTGAAGACCTTTTTGATTTATGTTGAACCTGTCTTTAGCAAGGCTGGAGAGACAATTGGAATAAATTATATGGGAATGGACATAACCGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGTGAGGAGATTGCAGTACAAAAAGCCAAGGAATCAGAGCTGAACAAAACAATTCATATCACGGAGGAAACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATTAGATCTCCACTGGCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAACAACATCTGTTAGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTTTCTAAGGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTGCTACAGACTGCTGCCGCATCATTGCGAAAATTTTTGGTTCTGGAGGGACGTATAGCCGATGATGTTCCTATAGAGGTCATTGGAGATGTTCTTAGGATTCGGCAAATCCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCATTGGGACAGGAGAAGAATGCCATAAGAAATCAACAGCTGATAGCTCAACAGTTCCGGTAAATGGTTTGCAAGAAGGAACATGTCTTCCAGCCCCTCAAAATGGCTTGTGTGGCCATAAACACGGCGACAGAAATCACTTGCATTGTGATGCACTAGGAACCCCAAGCAAGAGCGAAACCACAATGAATGGAAACAGAGAAAACAAGTCTTGTTCAGCTGAAACGACGGTATGGATACGCTGTGATGTATATGACACAGGAATTGGAATACCAGAAAATGCACTACCAACCCTTTTTAAGAGGTACATGCAAGCGAGTGCCGATCATGCTCGAAAGTATGGAGGGACTGGACTTGGGCTGGCAATATGCAAACAGCTGGTTGAATTGATGGGTGGCCATCTCACTGTTTCCAGCCGAGAAAACCATGGATCTACATTTACATTTGTGTTGCCATACAAGGTTTCAACCACCTGTAGTCCTTCCGACGATTCCGACGAGCTCTCGGATGACGAGTCTACAAATGATGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCACAGTTTTAGTTCCCTATCATCTTCCAACGGCGGATCCACAAGGATCCCAAACTCATTGATGCATACAACTGGGTATCCCACCTCAACCAAACTCAATGGATTTGCTGAAGGTGGTTCTTATCCTATTCCCTCAAACAACATCGCACCACAACAGGCTGCTTCTCCTAGAGATGCCCGTTACACCAATGCCGCAGTAACCTCAAGCGAATCACAATGTTTATCAAGTCAGATCAACTCAAATCTTGATAACCAAAACCAATCAGACACAAATGCTTGGTTGCAAAATGCCAGTGGCGTGAATTCTGTTTACAGATCAGAAACAACAAAGCAAGAAGATAGATTGGAAAAACAAAGTAATAAACTTCAAAAAACAGATCAGGGGAAAGAGAGATCCGATGCAAGTAATCACTGCAGAAATAGCAGTTGTGGTTCTGAAGTAACAGTGGCATTGGAGCCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGACTCAGTCCATGATGAAGAAGTTTGGCCAAAAAATCGATGTCGTAACTAACGGTATTGAAGCTGTTCGTGCAGTTCAACGACGTTCGTATGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGGCTTGAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAGGCAGCTGTAAATGCTGGAATAATCCAACCAACTACACCTTCTTGGACTCCCTCCTCCCGAAACAGGATGCCCATCATTGCTATGACGGCGAATTCAATGTCAGAAAGCGCAGATGAGTGTTATGAAAATGGTATGGACTCATTCGTATCAAAGCCAATCACGTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTACCACAACCTCCCTTGTAA 3012 41.8 MVCEMETGVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDLWQDIPSRKTDFVVQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASLQREQMLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLAGVVSMAEILSTTKLDREQQHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGTGEECHKKSTADSSTVPVNGLQEGTCLPAPQNGLCGHKHGDRNHLHCDALGTPSKSETTMNGNRENKSCSAETTVWIRCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTTCSPSDDSDELSDDESTNDEMTEGFFQFQPHSFSSLSSSNGGSTRIPNSLMHTTGYPTSTKLNGFAEGGSYPIPSNNIAPQQAASPRDARYTNAAVTSSESQCLSSQINSNLDNQNQSDTNAWLQNASGVNSVYRSETTKQEDRLEKQSNKLQKTDQGKERSDASNHCRNSSCGSEVTVALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLEATRLIRSFEETGSWEAAVNAGIIQPTTPSWTPSSRNRMPIIAMTANSMSESADECYENGMDSFVSKPITFQKLKECLERYLPQPPL 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29515973 29524192 + CrPI670011_05g017670.1 Cre05g1767 498280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1767 1003 FunFam Putative histidine kinase 5 359 436 - -
Cre05g1767 1003 ProSiteProfiles Response regulatory domain profile. 858 998 IPR001789 GO:0000160(InterPro)
Cre05g1767 1003 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre05g1767 1003 FunFam Histidine kinase 5 851 999 - -
Cre05g1767 1003 SMART HKATPase_4 482 672 IPR003594 -
Cre05g1767 1003 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 40 999 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Cre05g1767 1003 Coils Coil 92 112 - -
Cre05g1767 1003 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Cre05g1767 1003 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Cre05g1767 1003 SMART REC_2 857 994 IPR001789 GO:0000160(InterPro)
Cre05g1767 1003 FunFam Probable histidine kinase 1 559 675 - -
Cre05g1767 1003 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Cre05g1767 1003 MobiDBLite consensus disorder prediction 747 770 - -
Cre05g1767 1003 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre05g1767 1003 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre05g1767 1003 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre05g1767 1003 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre05g1767 1003 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 594 670 IPR003594 -
Cre05g1767 1003 MobiDBLite consensus disorder prediction 808 847 - -
Cre05g1767 1003 CDD REC_hyHK_CKI1_RcsC-like 859 994 - -
Cre05g1767 1003 MobiDBLite consensus disorder prediction 748 770 - -
Cre05g1767 1003 Pfam Response regulator receiver domain 859 926 IPR001789 GO:0000160(InterPro)
Cre05g1767 1003 Coils Coil 181 208 - -
Cre05g1767 1003 Gene3D - 854 998 - -
Cre05g1767 1003 MobiDBLite consensus disorder prediction 811 840 - -
Cre05g1767 1003 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre05g1767 1003 Gene3D - 436 676 IPR036890 -
Cre05g1767 1003 Coils Coil 342 362 - -
Cre05g1767 1003 SUPERFAMILY CheY-like 857 999 IPR011006 -
Cre05g1767 1003 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre05g1767 1003 Gene3D PAS domain 213 348 - -
Cre05g1767 1003 Coils Coil 809 829 - -
Cre05g1767 1003 Gene3D - 367 435 - -
Cre05g1767 1003 FunFam Histidine kinase 5 213 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1767 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1767 Cre-Chr5:29515973 Cre11g0603 Cre-Chr11:3144989 4.10E-51 dispersed
Cre05g1767 Cre-Chr5:29515973 Cre02g0608 Cre-Chr2:3057570 2.40E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g0323 . 5 1214 Histidine Kinase Gene Family AT2G17820 64.0 0.0e+00 1443.7
Cre11g0603 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1343.6
Cre09g1861 . 24 971 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1299.6
Cre02g0608 . 290 1242 Histidine Kinase Gene Family AT2G01830 53.6 1.9e-277 952.6
Cre06g0986 . 138 1079 Histidine Kinase Gene Family AT2G01830 54.0 2.0e-274 942.6
Cre02g1268 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.8 3.8e-265 911.8
Cre05g1767 . 1 998 Histidine Kinase Gene Family AT5G10720 57.4 1.2e-291 999.6
Cre08g0848 . 108 1227 Histidine Kinase Gene Family AT1G09570 80.1 0.0e+00 1833.5
Cre08g0851 . 18 1141 Histidine Kinase Gene Family AT1G09570 71.3 0.0e+00 1610.5
Cre02g0625 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.7 0.0e+00 1203.7
Cre05g0804 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1194.5
Cre05g0804 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1671.4
Cre03g1005 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.4 0.0e+00 1236.5
Cre08g0848 . 128 1161 Histidine Kinase Gene Family AT2G18790 53.6 0.0e+00 1092.8
Cre02g0625 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1075.5
Cre08g0851 . 22 1075 Histidine Kinase Gene Family AT2G18790 50.8 3.9e-308 1054.7
Cre02g0625 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.5 0.0e+00 1363.2
Cre05g0804 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.8 0.0e+00 1150.2
Cre08g0848 . 116 1221 Histidine Kinase Gene Family AT5G35840 52.0 0.0e+00 1118.6
Cre05g0804 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1705.6
Cre03g1005 . 32 1113 Histidine Kinase Gene Family AT4G16250 58.6 0.0e+00 1274.6
Cre08g0848 . 115 1222 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1138.6
Cre02g0625 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.5 0.0e+00 1118.6
Cre03g1005 . 15 1113 Histidine Kinase Gene Family AT4G18130 62.7 0.0e+00 1361.7
Cre05g0804 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1273.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53715 PF02518 HATPase_c 9.90E-28 CL0025 Cre TR