Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1771 ATGCTTGCTTCCAAGGCTGTAGCTGAGGCTCACAAAAAGAGTGGTGTACCGTTGTTGCATGTTTGCCACGTGTGTGGTGTGGACCCGAGTAAATACGACCATTCCAATGGCTCTTCGAAATCTATCACGGTAGCATTGACTCAGTCCTACCGTAAGCTCACCTCTTCCTACGGCGACGCGTTCCAGTTCAATTTGGGCCGTTGGGCCGCTCCACGGGCATGTGAGGAACGGCTTTTTCCTTCCACATCTGTAACCATAGCTACTAGATACTGTTTGTTAGTTTTCTTTTTTCTTTCTTCCATTTTGATCGAAGAGATTGGAGCTGGGCATTTTCAGAGCCTAGACAGTATGGGCTATCTGAATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTAAGCGGCGGAGGATTAAGTCAGAATGGAAAGTTCAGCTACGGATATGCTAGCTCTCCAGGGAAGAGATCTTCGATGGAAGATTTTTATGAGACACGAATAGATGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTTGATGGTCATGGCGGAGCTCGAGCTGCGGAGTATGTTAAGCACAATCTTTTTAGTAACTTGATCAGCCATCCAAAGTTCATATCGGATACCAAGTCCGCTATAGCTGATGCATACAACCACACAGACACTGAATTTCTTAAGTCGGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGTGACTCTAGAGCTGTTATTTGCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATTGAGGATGCTGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCGCTTGAATTTCTTATACTTGCAAGTGATGGACTGTGGGATGTTGTCTCTAATGAGGAAGCCGTTGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCAGCGAAGAGGCTGATGCAAGAAGCATATCAGAGAGGCAGTGCAGATAACATTACTTGCGTCGTCGTTCGTTTCTTGGCGAATCAAGGAAGTCCCTCTCTTGCAACATCTGGGATAGACATAACAAGAAGTTGTCAGGTTGGTTTTTGTGCAATATACGGTGTCCGAGTTGCTGCCTACATAGTCTTTAGCTTCCTGTCTGGAGGTTGTAGAAATGTGCAATTGGTTAATTTGTAA 1350 45.78 MLASKAVAEAHKKSGVPLLHVCHVCGVDPSKYDHSNGSSKSITVALTQSYRKLTSSYGDAFQFNLGRWAAPRACEERLFPSTSVTIATRYCLLVFFFLSSILIEEIGAGHFQSLDSMGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAIADAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGSPSLATSGIDITRSCQVGFCAIYGVRVAAYIVFSFLSGGCRNVQLVNL 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29588318 29597407 - CrPI670011_05g017710.1 Cre05g1771 498284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1771 449 Gene3D - 142 400 IPR036457 -
Cre05g1771 449 PANTHER PROTEIN PHOSPHATASE 134 395 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre05g1771 449 Pfam Protein phosphatase 2C 179 389 IPR001932 -
Cre05g1771 449 ProSitePatterns PPM-type phosphatase domain signature. 181 189 IPR000222 GO:0043169(InterPro)
Cre05g1771 449 SMART PP2C_SIG_2 161 396 IPR001932 -
Cre05g1771 449 SMART PP2C_4 140 394 IPR001932 -
Cre05g1771 449 SUPERFAMILY PP2C-like 144 396 IPR036457 -
Cre05g1771 449 ProSiteProfiles PPM-type phosphatase domain profile. 150 396 IPR001932 -
Cre05g1771 449 CDD PP2Cc 149 396 IPR001932 -
Cre05g1771 449 FunFam probable protein phosphatase 2C 59 142 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1063 Cre-Chr5:9878767 Cre05g1771 Cre-Chr5:29588318 6.80E-94 dispersed
Cre05g1771 Cre-Chr5:29588318 Cre08g0590 Cre-Chr8:18810273 2.10E-95 dispersed
Cre05g1771 Cre-Chr5:29588318 Cre11g1835 Cre-Chr11:29988373 1.70E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1771 K17506 - csv:101216117 574.704