Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1786 ATGCAGGCAGATCAGACGGTGATAAGCTTGAGACCTGGTGGTGGCGGTGGCTTTCGTGGAAGCAGATTTGTTACACCTCGTTTCGATTCATCCTCCGCCGACTCTTCGTCGCTTCGTCCACATGGCGGCGCTGCTTCAATCCTCAAGACTGGCGATCTACGGTTTGAAGGTCGTGAGCGAATGCAATACACTCGAGACCAGCTTCTGCAGCTTAGGGAGGTTGCAACAGTCCCTGAGGATATCTTGAAAGTCAAACTAGAAGTTGAGTCAGAGATAGTTGGGGAGGATCAAACATGGGCCCGTGCTGAAAGCAATCAGCAATCACAATCTCAAGGTCGTTACTTTGAGGCAGACAATCGAGATTGGCGTGGTCGATCTGGACAGTTGCCCGGCTCCACAGAGGAAGGATCTTGGGAAGCAAATAAGGATTTTTCTGGACAATCTGAGTTGAGGTTCCAAGACTCGAATAATAGGAATCAAGTTTCTGGTAACCAAGGGGTCGGCACTGCACCTGCTCTCATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGATAAGGAACGAGTTTTGAAGACGGTTAAAGGTATACTGAATAAATTGACTCCAGAAAAGTTTGACATACTCAAAGGTCAACTGATTGACTCAGGAATTACATCCGCTGATATTTTGAAGGATGTTATATCGCTTATATTTGAGAAGGCCGTATTTGAGCCCACATTTTGCCCTATGTATGCACTTTTGTGCTCTGACCTCAATGAGAAGCTTCCTTCATTTCCATCCGAAGTGCCTGGAGAGAAAGATATCACTTTTAAACGTGTTCTCTTAAATATTTGCCAAGAGGCATTTGAAGGTGCTGATAACATGAGGGCAGAAATCAGGCAGATGACTAGTCCTGAGCAGGAAACGGAAAGAAGAGATAAAGAAAGAATGGTTAAGCTTCGGACTCTAGGAAACATTCGCCTGATAGGTGAGCTTCTGAAACAGAAGATGGTGCCTGAAAAGATTGTTCACCATATTGTTCTGGAGCTGTTGGGGCCTGACCCTAAAATATGCCCTGCAGAGGAGAATGTCGAGGCTATTAGTCAGTTTTTTAACACAATAGGTAAGCAACTGGATGAGAGCCCAAAATCTCGACGGGTCAATGATGTATATTTCAGCCGGTTGAAGGAGCTCACTGCAAACACCCAATTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTGCGGGCCAATAACTGGGTTCCTAGACGTGAAGAGGTGAAAGCGAAAACCATCACTGAAATTCATTCAGAGGCTGAAAAGAATTTAGGGCTCCGTCCAGGTTCAATGGCAATGATGAGAAATGGCCGTAATACCGAGGCACTTGGGGGATTAAGTCCTGGTGGTTTTCCAGTTGCCCGACCTGGCTTTGGAGGTATGATGCCTGGAATGCCTGGAACCAGGAAAATGCCTGGAATGCCTGGACTTGAGTCAGACAATTGGGAAGTTCCTAGATCCCGAGCAATGCCAAGGGGCGAAACCAGAGGTCCTACTGCGCGCGGCCAGTCATCATTAACGGGCAAAACACCTTCCATTAATTCAAAATATTTACCTCAGGGAAGTGGAGGTGTAATAACAGGGAAAACAAGTGCCTTGCTACAGGGTAGTGCTGCTGCATCTCCTGCCCGACCACCGAGTTCCATGCCTGGAACTCAGCCTGTTCCTCACAACCCTAAACCAGTTGCTCCAGTTACACCTATCATATCTTCGCCTCCGAAGCCTGCAGCTCCTGCTGCATCCAATCTGGTTGATCTTCGCAAGAAAACCGTTTCGCTGCTTGAGGAATACTTCAGCGTACGGATTCTTGATGAAGCTCTACAGTGTGTAGAGGAGCTGAAATCCCCAGCTTATCACCCTGAGGTTGTTAAAGAATCTCTTACCATTGCACTTGAGAAGATTCCACCATGTGTAGACCCAGTTGTTAAGCTTCTTGAGCACTTGCTTCACAAGAATGTCTTGACTGCAAAGGATATAGGTACTGGGTGCCTTCTATATGGGTCAATGATGGATGATATCGGCATCGATCTACCAAAAGCACCAAACAATTTCGGTGAGATTCTCGGGAAGTTAATTTTGATCGGAGGTCTGGATTTCGCTGTTGTGGAGGAGATTCTTAAGAAGGTGGAAGATAACTACTTTCAAAAATCCATTTTTGGTGGTGCTATGAAGATCCTCAACTCTAGCCCTTCTGGAGAAGGAATTCTGGCAACTCAAAGCGTTGAGATCCAGGCATGTGAGACTTTACTTGCGTGA 2313 46.26 MQADQTVISLRPGGGGGFRGSRFVTPRFDSSSADSSSLRPHGGAASILKTGDLRFEGRERMQYTRDQLLQLREVATVPEDILKVKLEVESEIVGEDQTWARAESNQQSQSQGRYFEADNRDWRGRSGQLPGSTEEGSWEANKDFSGQSELRFQDSNNRNQVSGNQGVGTAPALIKAEVPWSVRRGNISDKERVLKTVKGILNKLTPEKFDILKGQLIDSGITSADILKDVISLIFEKAVFEPTFCPMYALLCSDLNEKLPSFPSEVPGEKDITFKRVLLNICQEAFEGADNMRAEIRQMTSPEQETERRDKERMVKLRTLGNIRLIGELLKQKMVPEKIVHHIVLELLGPDPKICPAEENVEAISQFFNTIGKQLDESPKSRRVNDVYFSRLKELTANTQLAPRLRFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNTEALGGLSPGGFPVARPGFGGMMPGMPGTRKMPGMPGLESDNWEVPRSRAMPRGETRGPTARGQSSLTGKTPSINSKYLPQGSGGVITGKTSALLQGSAAASPARPPSSMPGTQPVPHNPKPVAPVTPIISSPPKPAAPAASNLVDLRKKTVSLLEEYFSVRILDEALQCVEELKSPAYHPEVVKESLTIALEKIPPCVDPVVKLLEHLLHKNVLTAKDIGTGCLLYGSMMDDIGIDLPKAPNNFGEILGKLILIGGLDFAVVEEILKKVEDNYFQKSIFGGAMKILNSSPSGEGILATQSVEIQACETLLA 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29806691 29811850 + CrPI670011_05g017860.1 Cre05g1786 498299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1786 770 Gene3D - 602 758 - -
Cre05g1786 770 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 49 768 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Cre05g1786 770 SMART if4_15 194 419 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cre05g1786 770 MobiDBLite consensus disorder prediction 99 115 - -
Cre05g1786 770 FunFam Eukaryotic translation initiation factor isoform 4G-2 185 420 - -
Cre05g1786 770 MobiDBLite consensus disorder prediction 554 575 - -
Cre05g1786 770 MobiDBLite consensus disorder prediction 99 140 - -
Cre05g1786 770 ProSiteProfiles MI domain profile. 604 726 IPR003891 -
Cre05g1786 770 SUPERFAMILY ARM repeat 187 422 IPR016024 -
Cre05g1786 770 MobiDBLite consensus disorder prediction 1 44 - -
Cre05g1786 770 MobiDBLite consensus disorder prediction 507 538 - -
Cre05g1786 770 Pfam MA3 domain 605 717 IPR003891 -
Cre05g1786 770 SUPERFAMILY ARM repeat 601 756 IPR016024 -
Cre05g1786 770 MobiDBLite consensus disorder prediction 25 39 - -
Cre05g1786 770 Gene3D - 185 420 - -
Cre05g1786 770 Pfam MIF4G domain 194 419 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cre05g1786 770 MobiDBLite consensus disorder prediction 517 538 - -
Cre05g1786 770 SMART ma3_7 605 717 IPR003891 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1786 Cre-Chr5:29806691 Cre06g1613 Cre-Chr6:11772458 7.20E-48 dispersed
Cre05g1786 Cre-Chr5:29806691 Cre06g2121 Cre-Chr6:28972978 1.90E-282 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1786 K03260 - csv:101211356 1298.11