Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1787 ATGCCCGCGCTTACAAGCTCTGGTCGGCGCGCAAAGAGCTTTTCACTTCATCGGTCGACGGACAAAGCCATGGCTCGCCGCCATAGCCAAGCTCAACCGTCCTGTTGGAACCGTGTGCTACAGTTAATCGAGTGCTTTTTCATGCAATTTCTCGTGCGATTGGTCTCTCTCGTGATTGATATGGGTATATACCTCAGCAATCCCAAAACAGAGAAGTCCTCTGAAGACGGTGAGAATAGTCGGCTTAGATATGGACTATCGTCTATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAGTTCCTGATCTGGATGCCTGCACTTCCTTCTTTGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTCTGTGCCAAGTACCTACATCAGCAAGTGAAGAAAAATGACACTTTTGCGGCTGGAGATATAGGAACTTCTGTGCAGAAAGCATTCTTCAGAATGGATGAAATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTGTTTTGGGTGATAGATTGAACAAGTTCACTGGCATGATAGAAGGGTTAATCTGGTCCCCAAAAAGCAGTGATGCAAGTGACCTGGCTGATGATTGGGCTTTTGAGGAGGGTCCACACTCTGATTTTACTGGCCCAACTTCCGGGTGTACAGCTTGTGTTGCAATTATTAGAAATAACAAACTAGTTGTTGCAAATGCTGGTGATTCTCGCTGTGTGCTATCAAGAAAGGGCCAGGCCCACAGTCTCTCTAGAGATCACAAGCCTGATCTTGAGGCTGAGAAGGATAGAATTCTGAAAGCTGGTGGTTTTATTCATGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGACATGGAATTTAAACAGAATAAATTTTTACCTGCTGAAAAACAAATTATTACTGCAAACCCTGATGTAACCACTGTCGAGCTTTGCGACGATGATGAGTTTATTGTGATAGCTTGTGATGGTATATGGGATTGCATGTCTAACCAGCAACTGGTAGATTTTATACATGAACAGCTAAAATCAGAAACTAAACTCTCTGTGGTTGTTGAGAGAGTACTTGATAGGTGTTTGGCACCTTCCACTGCTGGTGGTGAGGGATGTGATAACATGACCATGATTTTGGTGCAGTTTAAGAAAGATAATCAATCAAACTCCTCCATAGATGGCCAAACTTCACCTGCCGCCACTGCCTGTGCCGAACCAGACAGTACCGAATCGATGCAGAAAGATGAATTGAGCCACAGACTTTGA 1287 44.99 MPALTSSGRRAKSFSLHRSTDKAMARRHSQAQPSCWNRVLQLIECFFMQFLVRLVSLVIDMGIYLSNPKTEKSSEDGENSRLRYGLSSMQGWRATMEDAHAAVPDLDACTSFFGVYDGHGGKVVAKFCAKYLHQQVKKNDTFAAGDIGTSVQKAFFRMDEMMRGQRGWRELAVLGDRLNKFTGMIEGLIWSPKSSDASDLADDWAFEEGPHSDFTGPTSGCTACVAIIRNNKLVVANAGDSRCVLSRKGQAHSLSRDHKPDLEAEKDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIITANPDVTTVELCDDDEFIVIACDGIWDCMSNQQLVDFIHEQLKSETKLSVVVERVLDRCLAPSTAGGEGCDNMTMILVQFKKDNQSNSSIDGQTSPAATACAEPDSTESMQKDELSHRL 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29820065 29828796 + CrPI670011_05g017870.1 Cre05g1787 498300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1787 428 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169(InterPro)
Cre05g1787 428 ProSiteProfiles PPM-type phosphatase domain profile. 83 389 IPR001932 -
Cre05g1787 428 Gene3D - 60 390 IPR036457 -
Cre05g1787 428 MobiDBLite consensus disorder prediction 1 27 - -
Cre05g1787 428 SUPERFAMILY PP2C-like 63 390 IPR036457 -
Cre05g1787 428 MobiDBLite consensus disorder prediction 396 428 - -
Cre05g1787 428 MobiDBLite consensus disorder prediction 396 415 - -
Cre05g1787 428 CDD PP2Cc 83 389 IPR001932 -
Cre05g1787 428 PANTHER PROTEIN PHOSPHATASE 2C 71 390 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Cre05g1787 428 Pfam Protein phosphatase 2C 83 164 IPR001932 -
Cre05g1787 428 Pfam Protein phosphatase 2C 215 373 IPR001932 -
Cre05g1787 428 SMART PP2C_4 73 387 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1787 Cre-Chr5:29820065 Cre11g2280 Cre-Chr11:34511999 1.10E-34 dispersed
Cre05g1787 Cre-Chr5:29820065 Cre09g0318 Cre-Chr9:3085469 7.10E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1787 K17499 - csv:101211604 669.848