Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1796 GCCCTCAAATTCCATCGTATTTCCCATTCATACATAGCTTCAGTCTCCCAGCTTCATTTCCCTCCCACGAGCACGAAGGATGCGTGCGTCTTTTTCGTATCCCTTCTCCGTACTGTCATTACTCAAAAGCACAGAGAGGTCGTTTCCTCTCTGAAACTGGCGTCTGACTCGACCGAGGAACGACGGCATTGCGGTTTAATCTCCAAGACCTTGAAACTCATGGGGACATCAGGCGCAAAGGACGATATAGAGATGAATAGTGAGGGGGAAGACTTGTCACCTGGAACGGATATGGATACAGATGATGACGATTATTATTCTGAGCCAGTCAACATACATGATCTGGGGGAAGCATTTCTAAATGATTTTTGTAAGAAGTCATCAATGGCATTTTTTAATCAGTACGGCCTTATCAGTCACCAAATCAACTCGTACAATGAGTTCATAAAAAGTGGTCTTCAGAAGGCCTTTGATTATTTTGGTGAGATTGTAGTTCAGCCAGGATATGACCCCTCTAAGAAAGGAGACGGGGAATGGAGATATGCTTCAGTGAAGTTTGGTAAGGTAACCCTCGATAAGCCAAAGTTCTGGGGTGGTGCAGCAAGTGGAAAAGAGTATAACATGCTTCCTAGGCATGCTCGACTTCAGAACATGACTTATTCATCAAGGATGAAAATGGAAATCAGTTTAGAGGTATATACTCAAAGGTTAGTCAGAAGCGACAAATTTAAAACTGGAAAAGATCAATATGTCGACAAGGAACATGTAACGGGAGGAGAGATCAGGGATATCTTTATAGGCAGGCTACCTGTGATGGTGAATTCTGACCTCTGCTGGATGAAGGATGAGCAGAAACGTGACTGTGAATTTGATCATGGAGGTTATTTTTTAATCAAAGGTGCAGAAAAAATATTTGTTGCTCAAGAGCAGAGTTGTTTGAGAAGACTCTGGATTTCTAATATTCAAGGCTGGACTGTGGCATACAGATCAGAAGTTAAGAGAAATAGACTAATTATTAGACTAGTTGAAAATTCCAAGTCTGAAGAACTAAAAAGCAAGGAGAAAGTCCTCAATGTATATTTTTTGTCCACAGAAGTTCCTGTGTGGATTTTATTCTTTGCTCTTGGTGTTTCATCAGACAAGGAAATAGTAGATTTAATCGACTATGGCAGAGATGATCCGACTGTTCTGAATATTCTCTTTGCCTCTGTTCGTGAAGTTGATAATGATGATAAGTGGAAAGACTTTCGAAGAGGTAAAAGAGCGCTGAATTTTTTGGACAATGAGGTTAAAAAGACAAGTTTTCCACCTGCTGAAAAAATTGAAGATTGCCTGAACCTATATCTTTTTGCCAGCTTGAAAGGCTTAAAGCAGAAGTGTCGTTTCCTTGGATATATGGTTAAATGTCTTCTGCAAGCCTATACTGGCCGGAGGAAATGTGATAATAGGGATGATTTCCGCAATAAGAGGTTTGAGTTGGCTGGAGAACTGCTTGAAAGAGAGATTAAAGTACATATTGCACATGCACGTAGGCGCATGGAAAAAGCTTTACAAAGAGACCTCTATGGGGATCGTGTAGTGCGCCAAATAGAACACTATTTCGATGCTTCAATAATCACTAATGGTCTATCCCGAGCATTCTCTACTGGAGCATGGGCACATTCATTTAAGAGGATGGAAAGGATTTCAGGTGTGGTTGCAACTCTTGGCCGTGCTAATCCCTTGCAGACAATGGCTGAATTGAGGAGAACACGTCAACAGGTTGCATACACTGGGAAAGTCGGTGATCAAAGATACCCGCATCCTTCTCACTGGGGAAGGGTTTGCTTCCTCTCCACTCCGGATGGTGAAAATTGTGGGCTTATTAAAAATTTGTCTGTCACAGGACTTGTAAGCTTAAACACATCAAAGCCCATAGTTCCCACATTGTTTCGATGTGGAATGGAGAATTTGGTGGATGATACGTTTACTTCTCTTAGTGGGAAGCACAAAATTTTTCTCGATGGGGAATGGGTTGGAGTTTGTGAAGATTCCCTTTCATTTGTAATGAAAGTGAGACGCAAGCGACGAAGGGATCCGTTGCTGCATCAGGTAGAAGTCAAAAGAGATGAACAGCTGAAAGAGGTACGTATATTTTCCGACGCTGGAAGGATATTACGTCCTCTCTTAGTTGTAGAGAACTTAAATAGGATTGATAAGTCTAAGGGAGAAAACTACACGTTTCAATCCCTTTTGGACAAGGGAATAATTGAACTTATTGGAACTGAAGAAGAAGAAGACTGTCGTACAGCTTGGAGTATTAAGCATCTTGCGGAAGATGAAGGGACTACGAAATATTCCCATTGTGAACTTGATATGTCATTTTTATTAGGTTTAAGCTGCTCACTTGTCCCGTTTGCAAATCATGACCATGCTAGGAGGGCTCTGTTTCAATCCCAGAAGCACTCAAATCAAGCTATTGGATTTTCAACAACCAATTCTAATTTTCGTGTGGATACTTTATCCCACCAGTTACACTATCCACAAAGACCACTTTTTCGTACAATGACTGCTGATTGCCTTGGAACGCCTGGATACCTGTCATCTCACACCGGTATACTACCAAAACCTGAGTTCTATAATGGTCAGAATGCTATTGTGGCAGTCAATGTTCATCTGGGTTACAACCAAGAAGATTCATTAGTAATGAACAGGGCTTCTCTGGAGCGTGGCATGTTTCGGTCTGAGCATATCCGGAGTTACAAGGCTGAGGTAGATAATAAAGAATCTTCAGAGAAGAGGCGAAAATCTGATGATGTAATAAATTTTGGAAAAACTCAAAGTAAAATTGGAAGAGTTGACAGCTTAGACGAGGATGGCTTCCCTTACATCGGTGCAAATTTGCAGAGTGGGGACATTGTCATTGGTAGATGTGCGGAATCTGGGGCCGATCACAGTATCAAACTGAAGCACACTGAGAAGGGCATGGTTCAGAAAGTTGTGCTCTCTTCTAATGACGACGGGAAGAATTATGCTGTTGTATCCCTCAGACAGGTTCGATCTCCTTGTCTTGGAGACAAGTTTTCCAGTATGCATGGACAAAAGGGAGTTCTGGGGTTTTTGGAGTCTCAAGAGAATTTTCCCTTCACCATCCAGGGGATAGTTCCAGATATTGTTATAAATCCACATGCTTTTCCTTCGCGACAGACTCCTGGTCAACTATTGGAAGCGGCTCTCGGGAAAGGGATTGCTGCTGGCGGTTCTCTAAAATATGCGACGCCTTTCTCAACCCCTTCTGTTGATGCCATTACAGACCAGCTTCACAGGGCAGGGTTTTCAAGATGGGGAAGCGAGAGGGTTTACAATGGCCGAACTGGCGAAATGATGCGATCACTCATATTCATGGGTCCAACATTCTACCAGCGCTTAATCCACATGGCTGAAGACAAGGTTAAATTTCGCAACACTGGCCCTGTCCACCCTCTCACACGACAACCTGTTGCCGACCGAAAGCGTTTTGGCGGGATCAAGTTCGGAGAGATGGAACGTGATTGTCTTATAGCTCATGGTGCCTCGGCCAACTTGCACGAACGTCTATTTACCCTCAGTGATTCTTCCCAGATGCACGTTTGCCAGAAATGCAAGAACGTTGCGAGTGTGATTCAGCGATCGGTGGCTGGTGGTCGTAAGATAAGGGGTCCATATTGTCGGGTTTGTGAGTCGGTCGATGATATCGTGAGGGTAAATGTGCCGTATGGAGCCAAGTTGTTGTGCCAGGAGCTATTCAGCATGGGCATCAATCTCAAGTTCGAAACTCAGCTGTGTTGA 3807 43.16 ALKFHRISHSYIASVSQLHFPPTSTKDACVFFVSLLRTVITQKHREVVSSLKLASDSTEERRHCGLISKTLKLMGTSGAKDDIEMNSEGEDLSPGTDMDTDDDDYYSEPVNIHDLGEAFLNDFCKKSSMAFFNQYGLISHQINSYNEFIKSGLQKAFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKMEISLEVYTQRLVRSDKFKTGKDQYVDKEHVTGGEIRDIFIGRLPVMVNSDLCWMKDEQKRDCEFDHGGYFLIKGAEKIFVAQEQSCLRRLWISNIQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALNFLDNEVKKTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAGELLEREIKVHIAHARRRMEKALQRDLYGDRVVRQIEHYFDASIITNGLSRAFSTGAWAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDQRYPHPSHWGRVCFLSTPDGENCGLIKNLSVTGLVSLNTSKPIVPTLFRCGMENLVDDTFTSLSGKHKIFLDGEWVGVCEDSLSFVMKVRRKRRRDPLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRTAWSIKHLAEDEGTTKYSHCELDMSFLLGLSCSLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDVINFGKTQSKIGRVDSLDEDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29874719 29883196 - CrPI670011_05g017960.1 Cre05g1796 498309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1796 1268 Pfam RNA polymerase Rpb2, domain 3 569 628 IPR007645 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cre05g1796 1268 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 129 1264 IPR015712 GO:0001055(PANTHER)|GO:0003899(PANTHER)|GO:0003899(InterPro)|GO:0005665(PANTHER)|GO:0006351(InterPro)|GO:0032549(InterPro)
Cre05g1796 1268 Gene3D RNA polymerase alpha subunit dimerisation domain 1152 1266 - -
Cre05g1796 1268 FunFam DNA-directed RNA polymerase subunit beta 129 313 - -
Cre05g1796 1268 CDD RNA_pol_B_RPB2 137 1264 IPR015712 GO:0003899(InterPro)|GO:0006351(InterPro)|GO:0032549(InterPro)
Cre05g1796 1268 FunFam DNA-directed RNA polymerase subunit beta 1152 1266 - -
Cre05g1796 1268 Gene3D - 825 1014 IPR014724 GO:0003899(InterPro)
Cre05g1796 1268 Pfam RNA polymerase Rpb2, domain 4 665 726 IPR007646 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cre05g1796 1268 Gene3D - 795 1151 IPR037033 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cre05g1796 1268 MobiDBLite consensus disorder prediction 80 100 - -
Cre05g1796 1268 Pfam RNA polymerase Rpb2, domain 6 794 1165 IPR007120 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cre05g1796 1268 Pfam RNA polymerase Rpb2, domain 5 741 784 IPR007647 GO:0006351(InterPro)
Cre05g1796 1268 ProSitePatterns RNA polymerases beta chain signature. 1018 1030 IPR007121 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cre05g1796 1268 Pfam RNA polymerase Rpb2, domain 2 356 490 IPR007642 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cre05g1796 1268 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 124 1265 - -
Cre05g1796 1268 Gene3D - 129 312 - -
Cre05g1796 1268 Gene3D - 481 658 - -
Cre05g1796 1268 Pfam RNA polymerase Rpb2, domain 7 1167 1265 IPR007641 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cre05g1796 1268 Gene3D RNA polymerase Rpb2, domain 2 318 480 IPR037034 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cre05g1796 1268 FunFam DNA-directed RNA polymerase subunit beta 480 668 - -
Cre05g1796 1268 Pfam RNA polymerase beta subunit 136 524 IPR007644 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cre05g1796 1268 FunFam DNA-directed RNA polymerase subunit beta 896 1014 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1796 K16252 - - csv:101212812 2266.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1914 Cre-Chr4:36709112 Cre05g1796 Cre-Chr5:29874719 5.50E-188 dispersed
Cre05g1796 Cre-Chr5:29874719 Cre07g0372 Cre-Chr7:1424469 1.10E-114 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g576 Blo01g01419 . Bda01g00661 . . Bpe02g00534 . Bma01g02175 . . Cma01g01667 . Car09g00358 . . . . . . . . . . . Cla05g01679 Cam05g1794 Cec05g1802 Cco05g1858 Clacu05g1781 Cmu05g1666 Cre05g1796 . . Cone17ag0982 . Lsi04g01338 . . . . . . . . . . . Sed13g1963 Cmo01g01716 Cmo09g00414 Cma09g00409 . Car01g01281 . . Cpe02g00323 Bhi09g03010 Tan01g3560 Cmetu07g2167 . Hepe01g1964 Mch11g0501 . . . . . . . . . . . Cme07g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010517 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 32