Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1798 ATGTCGGACGAGGAGCACCACTTCGAATCTAAGGCCGACGCTGGAGCCTCCAAGACCTACCCACAGCAGGCTGGAACCATCCGGAAAAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGCAAGCACGGTCATGCTAAGTGTCACTTTGTTGGAATCGATATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCTTCATCCCACAATTGTGATGTGCCCCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGATTTGAGGCTTCCAACTGATGATAACCTGCTCACTCAGATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGCCCAAAGAATTAG 483 46.79 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29913685 29915732 - CrPI670011_05g017980.1 Cre05g1798 498311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1798 160 MobiDBLite consensus disorder prediction 1 21 - -
Cre05g1798 160 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
Cre05g1798 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cre05g1798 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cre05g1798 160 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Cre05g1798 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cre05g1798 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cre05g1798 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Cre05g1798 160 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cre05g1798 160 Gene3D - 1 85 IPR014722 -
Cre05g1798 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0003746(PANTHER)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cre05g1798 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cre05g1798 160 Gene3D - 86 159 IPR012340 -
Cre05g1798 160 CDD S1_eIF5A 86 156 - -
Cre05g1798 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2562 Cre-Chr5:36865294 Cre05g1798 Cre-Chr5:29913685 4.40E-85 transposed
Cre05g1798 Cre-Chr5:29913685 Cre06g2109 Cre-Chr6:28899460 7.60E-85 wgd
Cre05g1798 Cre-Chr5:29913685 Cre08g1314 Cre-Chr8:26266852 9.30E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1798 K03263 - mdm:103423800 323.168