Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1800 ATGGCTTTATTTCGCAAATTCTTTTATCGGAAGCCACCGGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGTTTTCGACTGTTGCTTTACAACGGAGGTTTTGGAAGAAGACGAATACAAGGTCTATATTGGAGGGATTGTTGGGCAACTTCGTGAGAGTCTCACCGACGCTTCATTCATGGTGTTCAATTTCCGAGAAGGGGAGAATCATAGCCTAGTTACTAATATATTATCTGTATATGATATGACTGTCATGGACTATCCTCGACATTATGAAGGCTGTCCTCTACTCACTATGGAGATGATCCACCACTTTTTAAGATCCAGTGAAAGCTGGCTCTCACTTGGCCAACAGAATGTACTTTTGATGCACTGTGAAAGAGGGGGGTGGCCAGTCTTGGCTTTCATGTTGGCCGCTCTTCTGATTTACAGGAAGCAGTATGCCGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCGCGGGAACTTCTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCACAGTTGAGGTATCTTCAATATGTATCAAGAAGAAATGTGGCCTCAGAATGGCCTCCTCTTGACAGGGCTCTTACTCTAGACTGCATAATTATTAGATTTATTCCTAATATGGATGGGGAGGGTGGTTGCCGCCCAATATTTAGAATATACGGACAGGATCCCTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGTAAACTTGTTCGGCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATCCAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGATGTTTCGAGTTATGTTTAACACAGCATTTATAAGGTCAAATATTTTAATGCTTAACCGTGATGACATTGATATTTTATGGCACGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTTTCAGAGATGGATGCTTCCGCATCACTTATTTCAGTTGAGTTGCCAAATATTGAGGAGAAAGATGGTCTTCCAATTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAATGTGCTTCAGAAAATAACAGCTTCAAATTTACTTCAAGAGAAACTGGTTAGTTCCGGCTCTTTAGATAGAAACCAGTTGCTCGACTTATCTGTTGAAAAACTAATCTTGGAATCAGAGACATCTGAAGACAATATTGGAAGTCCCCGATTGAAGATACAGACAAAAAAATCTCAGCCTTCTTCCGAACTATCTCAGGCTGCAGGTTCAGAGAGATCAAAGATTGATCCCTCAGAATTGCAGGTTGCTCTCCAACTACCACCTCAGTCTAAAATCATCACCCAACGAATACCTCAACCTTCATTGTCTACGCCGGCCTCCTTCCGTAGTTCTATGCAAGGTTCACCTCGCCCTATATTAAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTATTACAAGATCATTCCAATTTTAGTGGTAAAGAAGTCATACATCCAGCGACAATATCTTCACCATCATATGCTTTGTTGAGTTCAAGTGGTCTAGATTCACTTAAAGATATTCAACCTTGTAAGCTTCCTATTTTGCCTCTCCCGCTAGCATTAGAGCCAAGATCTACATCAGAAAATTCTTCGACCACTGCGTCAACTTCAACCACTCCCGATCCATTGTCACTTCACCAACTTTCTTTGAAACCTATTAAATCTTCAATTTGTCAACCTCCTCAAGCCACATCACGGGTGAGAAGTCAATTATCACCGTCTTCATTACAACCAACTTCTACCTCTTTTCCTGAGGAGTCCCCACCCTCCTTCAATGAGAGCGAAGCTTCAAGAACCTCTTCCTCTTGTTTGTTAATATCATCTCCATCTTCTTGTACTAAGGAATCATTTTCCATCTCCACCCCTCCCCCTCCCCCCCCTCCTCCTCCCCTTCCCCATCTTGATTCACCTTTGGCTTTAGTAACTTCTCCGTCTTCTAGTAGGGAAAATGGTATTTTCCCATCCTCACCACAACCTCCTTCTACAACACTACTGTTATCCTCTACAAAGACATCAATTCCATCTGTTCCTCAATTTTCTTCGTCTGATGATCGTCTAGTTTCTTATCAGTCACCTAAAAAGAACTTGACGAGTGTCTCTCCCCCTCCCCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCATGTTGTAGCCCTAACTTGGGCGCTAGTGTTGCCTCGCCAACACCAGTGCCCCCACCCCCACCCCCACCCCCTTCATGGAAGGATGCTACAGACATATTCATGCATGATCCCCCACCTCCACCTCCACCTCCAGCCCCACCCTTGCCTCCATCTTCTTTCAGTTCAACATCTACTTGTGACTCTAGTATCACGCCTTTAGGGCCACCACCGCCACCACCACCTCCTCCTAGTCATGCACCACAAGATTTTGCCACTGTAGTTAGGAACTTGATGGCTGTATCTGGCCCTCCACCTCCCCCACCTCCCCCATCTCATTCTTCTCTAGATCCTAATACTGTATCTTCAGTACCGCCGCCGCCACCCCCTCCTAGTCTTGCACCAAATGTTTCTACAACAACTGTTAACTTGACACATGTCTCTGGCCCCCCTCCTCCTCCTCCACCACCTTTTGCAAATTCTGGTCTCACCTTATGTCCAGGTGCTGTAACGTCAGCTCCTCCTGCTCCGCCTCCTCCAGGTTTCTCAATGAAGGGTTCTGCAACACATGCTCCACCTGCACCCCCTCCTCCAGGTCTCAGCGGTAATAAACTCTCAAATGTCAATGGTACTTCCTCACAGTCTCACGTTGGCATTAGTAACAGCAACATACCTTCTGTTCCTGGACCACCTTCCAGCGCTCTATTCAATGCCAAGGGACGGGGCCTTGGACGTTTGAACTCCAAAAACCAGTCTCAACCTAAAAGGTCCAATTTGAAGCCATATCATTGGTTAAAATTAACGAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGACTGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCAGACTCCGGAGGTTCAGGTGGAAATTCAAATCGCCGAGCCTCAGGGCCAAAATCAGATAAAGTTCATTTGATTGAACTTCGACGGGCCTATAATTGTGAAATTATGCTTTCTAAAGTTAAGATTCCTTTGCCTGATATGATGTGTTCAGTCCTTGCATTGGATGATTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAGTTTTGTCCAACAAAGGAAGAAATGGAATTACTTAAGGGGTACAATGGGAATAAGGACAACTTGGGAAAATGTGAACAATTCTTTTTAGAGTTGATGAAAGTCCCACGAGTAGAGTCCAAGCTAAGGGTTTTTTCTTTCAAGATACAATTCCGATTGCAGGCCTCTGACCTTAGAAATAGTCTGAATACTATCAATTCGGCATCTGAAGAGATCAGAAGTTCGGTAAAGTTGAAAAGGGTAATGCAAACGATCCTTTCATTGGGTAATGCTTTGAACCACGGAACGGCCAGAGGTTCTGCTATTGGATTTCGACTTGATAGTCTCCTCAAACTCACTGATACACGAGCCAGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTCTAGATTTTCCGAAGGACCTTGTTAGTTTGGAAGCTTCTACAAAGATACAACTGAAATACTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTCGTTCAGGAATTGGCTAATTCAGAGAACGATGGGCTCGTTTCAGGAACTTTTTGCCGGACTTTAAAAGACTTTCTTTCTCATGCTGAGGCCGAAGTGAGGTCTCTTGCCTCTCTTTATTCTAATGTGGGTAGAAATGCTGATGCATTGGCTCTCTATTTCGGCGAAGATCCAGCACGTTGCCCTTTTGAGCAAGTTGTTTCTACACTGTTCAATTTCGTGAGGATGTTTGTGCGAGCGCATGAAGAAAACTGTAAGCAACTTGATTATGAAAAGAAGAAAGCACAGAAGGAAGCTGCAGAAAAGGAGAAGTTGAAACTCAATACCACAAAGAAGGAGTCAGGATTCTTGATGCAGACTCCAACCTAG 4275 44.16 MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDASFMVFNFREGENHSLVTNILSVYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVASEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMMFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDASASLISVELPNIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQEKLVSSGSLDRNQLLDLSVEKLILESETSEDNIGSPRLKIQTKKSQPSSELSQAAGSERSKIDPSELQVALQLPPQSKIITQRIPQPSLSTPASFRSSMQGSPRPILRYHSAPSALGITALLQDHSNFSGKEVIHPATISSPSYALLSSSGLDSLKDIQPCKLPILPLPLALEPRSTSENSSTTASTSTTPDPLSLHQLSLKPIKSSICQPPQATSRVRSQLSPSSLQPTSTSFPEESPPSFNESEASRTSSSCLLISSPSSCTKESFSISTPPPPPPPPPLPHLDSPLALVTSPSSSRENGIFPSSPQPPSTTLLLSSTKTSIPSVPQFSSSDDRLVSYQSPKKNLTSVSPPPPPPPPPPPPPPPCCSPNLGASVASPTPVPPPPPPPPSWKDATDIFMHDPPPPPPPPAPPLPPSSFSSTSTCDSSITPLGPPPPPPPPPSHAPQDFATVVRNLMAVSGPPPPPPPPSHSSLDPNTVSSVPPPPPPPSLAPNVSTTTVNLTHVSGPPPPPPPPFANSGLTLCPGAVTSAPPAPPPPGFSMKGSATHAPPAPPPPGLSGNKLSNVNGTSSQSHVGISNSNIPSVPGPPSSALFNAKGRGLGRLNSKNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKTDEASKAPEFDMSELESLFSAAAPNSDSGGSGGNSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDSALDVDQVENLIKFCPTKEEMELLKGYNGNKDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFRLQASDLRNSLNTINSASEEIRSSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELANSENDGLVSGTFCRTLKDFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVRMFVRAHEENCKQLDYEKKKAQKEAAEKEKLKLNTTKKESGFLMQTPT 1424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29989797 30003752 + CrPI670011_05g018000.1 Cre05g1800 498313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1800 1424 MobiDBLite consensus disorder prediction 1058 1080 - -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 827 843 - -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 571 593 - -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 607 666 - -
Cre05g1800 1424 Gene3D Formin, FH2 domain 998 1390 IPR042201 -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 667 683 - -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 570 593 - -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 774 790 - -
Cre05g1800 1424 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 902 916 - -
Cre05g1800 1424 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 430 461 - -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 430 456 - -
Cre05g1800 1424 PANTHER FORMIN-J 1 1405 IPR051144 -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 745 767 - -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 856 890 - -
Cre05g1800 1424 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1004 1405 IPR015425 -
Cre05g1800 1424 Pfam Formin Homology 2 Domain 1006 1379 IPR015425 -
Cre05g1800 1424 Coils Coil 1380 1415 - -
Cre05g1800 1424 SUPERFAMILY Formin homology 2 domain (FH2 domain) 930 1399 - -
Cre05g1800 1424 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 687 744 - -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 1058 1076 - -
Cre05g1800 1424 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cre05g1800 1424 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 607 1019 - -
Cre05g1800 1424 Gene3D - 196 341 - -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 957 985 - -
Cre05g1800 1424 SMART it6_source 669 1424 IPR015425 -
Cre05g1800 1424 SMART PTEN_C2_2 197 337 IPR014020 -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 797 814 - -
Cre05g1800 1424 MobiDBLite consensus disorder prediction 999 1013 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1800 K28090 - - csv:101214019 2163.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1538 Cre-Chr1:28597524 Cre05g1800 Cre-Chr5:29989797 1.40E-250 dispersed
Cre05g1800 Cre-Chr5:29989797 Cre06g2459 Cre-Chr6:32402265 4.90E-252 dispersed
Cre07g0594 Cre-Chr7:3745089 Cre05g1800 Cre-Chr5:29989797 1.80E-259 transposed
Cre05g1800 Cre-Chr5:29989797 Cre06g2103 Cre-Chr6:28833198 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g572 . Blo12g01054 . Bda03g00096 . . . . . . Cma01g01662 . Car09g00362 . . . Cpe06g00297 . . . . . . . Cla05g01683 Cam05g1798 Cec05g1807 Cco05g1867 Clacu05g1785 Cmu05g1671 Cre05g1800 . . Cone17ag0984 Cone20ag0324 Lsi04g02074 . . . . . . . Bpe14g00599 . . Bma02g00008 Sed05g1743 Cmo01g01711 Cmo09g00417 Cma09g00412 . Car01g01277 . . Cpe02g00327 Bhi09g03005 Tan01g3567 Cmetu07g0822 . Hepe01g1968 Mch11g0505 . . . . . . . . . . . Cme07g00118
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre04g1330 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 2.2e-191 666.0
Cre02g0980 . 102 671 Protein tyrosine phosphatase (PTP) family AT3G50110 58.4 1.1e-179 627.1
Cre10g1677 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 67.0 3.1e-154 542.0
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 65.2 0.0e+00 1116.7
Cre06g2103 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 55.9 0.0e+00 1090.9
Cre05g1800 . 1 1408 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.8e-299 1025.4
Cre09g0986 . 87 391 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.3e-122 435.3
Cre06g2686 . 125 1036 Protein tyrosine phosphatase (PTP) family AT5G23720 64.4 0.0e+00 1087.4
Cre06g1337 . 80 219 Protein tyrosine phosphatase (PTP) family AT3G06110 56.4 2.9e-42 168.7
Cre01g0393 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.4e-71 265.4
Cre05g2324 . 168 448 Protein tyrosine phosphatase (PTP) family AT3G52180 69.8 3.3e-115 411.8
Cre07g0876 . 10 256 Protein tyrosine phosphatase (PTP) family AT3G10940 68.7 6.9e-97 350.9
Cre10g1562 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.6 5.1e-203 704.1
Cre09g1063 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.2e-73 272.7
Cre03g1338 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.0 8.6e-54 207.6
Cre10g0493 . 71 403 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.2e-101 365.5
Cre11g0690 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.4e-80 297.0
Cre11g0690 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.4e-45 179.9
Cre10g0493 . 107 282 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.5e-43 171.0
Cre09g1063 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.6e-70 260.8
Cre03g1338 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 5.8e-58 221.1
Cre03g1338 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 4.0e-78 288.1
Cre07g0660 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 8.1e-63 239.2
Cre10g1677 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 67.0 3.1e-154 542.0
Cre02g0980 . 68 671 Protein tyrosine phosphatase (PTP) family AT3G19420 64.3 4.8e-220 761.1
Cre04g1330 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G19420 61.0 9.4e-200 693.7
Cre04g1330 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 2.2e-191 666.0
Cre02g0980 . 102 671 Protein tyrosine phosphatase (PTP) family AT3G50110 58.4 1.1e-179 627.1
Cre06g2103 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 55.9 0.0e+00 1090.9
Cre05g1800 . 1 1408 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.8e-299 1025.4
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 65.2 0.0e+00 1116.7
Cre02g2507 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 1.5e-69 260.0
Cre10g0432 . 22 310 Protein tyrosine phosphatase (PTP) family AT2G35320 61.2 1.5e-100 363.2
Cre04g0825 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.5e-286 982.2
Cre04g0825 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.1e-258 888.6
Cre04g0825 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 56.2 1.3e-183 640.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004653 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 42