Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g1802 | ATGGAGGAGAGGCATGTTCTGTTTGGTAAATATGAGATTGGGAGATTGCTAGGGAAGGGAACTTTTGCTAAGGTTTATTATGGAAAAGAATTGGAATCTGGTGAAAGTGTAGCGATTAAGGTTTTAAATAAGGACCATGTCAAGAAGGAAGGGATGATGGAGCAGATCCAGCGCGAGATTTCTGTTATGCGTCTTGTTCGTCATCCGAACATTGTTGAGTTGAAGGAAGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGCGGTGGTGAACTTTTTGCCAAAGTCGCTAGAGGAAAACTCAAGGAAGATGTGGCTCGGAAGTATTTCCAGCAGTTAATCAGCGCAGTTGATTACTGTCACAGCCGTGGAGTCTCTCATCGGGATTTGAAGCCGGAGAATCTTTTGCTGGATGAGAACGAAGATCTCAAGATCTCCGACTTTGGACTCTCCGCTTTACCGGAACAGCTTCGGAACGACGGTCTTCTCCACACGCAGTGCGGTACTCCGGCTTACGTCGCACCCGAAGTACTAAGAAGAAAGGGCTACGATGGAGCAAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTTTGTTAGCAGGATTCCTTCCATTTCAGGATGAGAACATCATGACTATGTATAAGAAAGTTTTCAAGGCCGAATTCGAATGTCCGCCATGGTTCTCCGCCGAATCGAAGCGTTTGATTTCGAAAATCCTCGTCGTAGATCCAGGAAGACGAATCACAATCGGAGCAATCACGCGAGTTCCTTGGTTCCGAAAAGATTTCTCGAGATCGCTCTCGTTCACGATGAAAGAAATAATCGCAGCGAAAGCAGAGGATTCCGATTCCGAGAGTCCAAAACTATCGACGCCAAAATTCTTTAATGCGTTCGAATTAATATCGTCGATGTCGTCCGGATTCGATCTGTCGAGTTTATTCGAGAACAAAAGGAAGACAGGATCCATGTTCACATCGCGATGCTCAGTATCGACGATAATGGAGAAGATCGAGACGGTGGCGAAGAAACTGAGCTTCAAGGTATCGGAAGTAAAAGATTTCAAGGTCCGGCTGCAAGGTCCGGCGGATGGGCGAAAAGGAATGCTGTCTGTGACGGCGGAGGTGTTCGAAATAGCGCCGGAAGTTGCGATAGTGGAATTCTCAAAGTCGTCCGGCGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGACGTCCGGCCGGCGCTGAAAGACATCGTTTGGACGTGGCAAGGTGAATGTGTCCCTAACGTTGACGGACGTCACGGCCAATTTGACGGCGACGGATTTTTATGA | 1332 | 46.92 | MEERHVLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVLNKDHVKKEGMMEQIQREISVMRLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFAKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAESKRLISKILVVDPGRRITIGAITRVPWFRKDFSRSLSFTMKEIIAAKAEDSDSESPKLSTPKFFNAFELISSMSSGFDLSSLFENKRKTGSMFTSRCSVSTIMEKIETVAKKLSFKVSEVKDFKVRLQGPADGRKGMLSVTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGECVPNVDGRHGQFDGDGFL | 443 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30026753 | 30028084 | - | CrPI670011_05g018020.1 | Cre05g1802 | 498315 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g1802 | 443 | Pfam | NAF domain | 298 | 354 | IPR004041 | GO:0007165(InterPro) | |
Cre05g1802 | 443 | CDD | CIPK_C | 302 | 416 | - | - | |
Cre05g1802 | 443 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 90 | - | - | |
Cre05g1802 | 443 | Pfam | Protein kinase domain | 11 | 265 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre05g1802 | 443 | SMART | serkin_6 | 11 | 265 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre05g1802 | 443 | FunFam | Non-specific serine/threonine protein kinase | 2 | 90 | - | - | |
Cre05g1802 | 443 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 129 | 141 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre05g1802 | 443 | Gene3D | Kinase associated domain 1, KA1 | 296 | 421 | - | - | |
Cre05g1802 | 443 | SUPERFAMILY | Protein kinase-like (PK-like) | 7 | 285 | IPR011009 | - | |
Cre05g1802 | 443 | FunFam | Non-specific serine/threonine protein kinase | 4 | 298 | - | - | |
Cre05g1802 | 443 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 4 | 413 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Cre05g1802 | 443 | Gene3D | Transferase(Phosphotransferase) domain 1 | 91 | 271 | - | - | |
Cre05g1802 | 443 | Coils | Coil | 39 | 59 | - | - | |
Cre05g1802 | 443 | CDD | STKc_SnRK3 | 10 | 264 | - | - | |
Cre05g1802 | 443 | ProSiteProfiles | Protein kinase domain profile. | 11 | 265 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre05g1802 | 443 | FunFam | Non-specific serine/threonine protein kinase | 296 | 420 | - | - | |
Cre05g1802 | 443 | ProSiteProfiles | NAF domain profile. | 296 | 321 | IPR018451 | GO:0007165(InterPro) | |
Cre05g1802 | 443 | ProSitePatterns | Protein kinases ATP-binding region signature. | 17 | 40 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g1802 | Cre-Chr5:30026753 | Cre08g1128 | Cre-Chr8:24453921 | 1.30E-105 | dispersed | |
Cre02g2416 | Cre-Chr2:37529971 | Cre05g1802 | Cre-Chr5:30026753 | 1.70E-35 | transposed | |
Cre10g1444 | Cre-Chr10:28245196 | Cre05g1802 | Cre-Chr5:30026753 | 8.80E-176 | transposed | |
Cre05g1802 | Cre-Chr5:30026753 | Cre06g2099 | Cre-Chr6:28784355 | 7.90E-140 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64156 | PF00069 | Pkinase | 1.30E-74 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g1802 | - | - | - | 0.0 |