Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1811 ATGACGGTTGAACCTAGACTCGATGACCCAATTGACCAATTTCCCACTGGAATGCGTGTTCTCGCTGTTGACGACGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGTTGCCAGTATCATGTCACTACAACTAATCAGGCTATTATGGCACTCAAGTTGCTGAGGGAGAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTTCACATGCCTGACATGGATGGATTTAAGCTGCTGGAGCTTGTTGGGCTGGAGATGGACCTGCCTGTTATTATGCTTTCTGCAAATGGAGATCCCAAACTTGTTATGAAAGGAATTACTCATGGAGCATGTGATTACTTGTTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGAAGAAAGAAATTTGATCCAAAGGACCGAATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAAAATGGCGAAGAAGCAGCAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAACGAAGATGATGACCAGGACTATGGGCAAGAGAATGATGACTCATCGACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTGGAACTGCATAGGAAGTTTGTAAATGCTGTCAACCAGTTAGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTTGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTAAAGAGAATCAGCTGTGTGGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGCAGATCCTTCTTATTTGAGAATTGGTTCCCTTAGCGGAATTGGGAATTTCCATTCTTTGACTGGACCTCCACAGTTTCCTAACACTGCTTATAGATCTATCCCAACCACCGGGATGCTTGGTCGATTGAATTCTCCTGCTTGTATGGGTATGCATGGCCTTTCTTCCCCGGGAACAGTCCAACTCAGTAATTTGAACAATTCAAGCAATGATCAGTCTACATTTCAGCCAATCATGCTTTCTGGAAACCGTAGTGGGAATATTTTCCGGGGAATGCCTGAGCCATCGGAAATCGATCAACTACAACATGTTAAACATGGGACTCATGCGGACAGTCTCTCTTCTGCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTCCCAAATGCAAACATGTCTTCTAGTACTCTAAGTAATCCTCTTTTAGGATTAACTAATGATCCCTTGATTTCAGAAGTCCAGCATCATGAAGTGAATGGTGGTAGAAAATTTGGAACTCCATCTTCCATTTCGGTAGTATCTTCAAATTCAGATAGCTCACGTCCTTCACTAGATAATGTTAGATGCACCGGTGACAATTGGTCGAACGCTGTTCATTCATCTAGGGTGCACTTGAATACAATTCCATCGAGCAACCTTTCTAATGTTGCTACTTCCTACCATAGTCAGTTGAGAGACAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACATTTCTTCTATTACTTCAATATCTACTCAGTCCCATGATTCAAGAATAGATTCTCAACGTCAAGCAGCCACAACTAGCAACAGGTTTGATCAAATGATCTCAAAGGTTCCTGTTCAAGATTGGAATGATCATAAAGAGGATTCCTATTACCACACAACTATGGCCTGTAGCTCATCAAATTCTTTGATACCAGTGAATGGTGCTGCAGAGACTTTGCCCAAGCGCTTGGAAAATCAGAACATAATCTTCTCCAGCAGCAAGGATTTTAATGTGACTAGTCAAGCAAATGTTCTTGATCATGCAATGGTGGAACATGATCAATTCAAGAAATCAACCATGGAGACATCACTCATGTTGAAACAAGGGTACCTGTATGATCATCAGCAAAAGATGCAATCTAGACTATCATCAAGTAACTGCGGCTCCTTGGAAGACATAGCATGTGCGATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGACTTTGGATGTGATAATTATCCCATCGGAACATGCATGTGA 2070 41.84 MTVEPRLDDPIDQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAIMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSENGEEAADPNGKFNKKRKDQNYNEDDDQDYGQENDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLTGPPQFPNTAYRSIPTTGMLGRLNSPACMGMHGLSSPGTVQLSNLNNSSNDQSTFQPIMLSGNRSGNIFRGMPEPSEIDQLQHVKHGTHADSLSSAFDERTVFPASIGLPNANMSSSTLSNPLLGLTNDPLISEVQHHEVNGGRKFGTPSSISVVSSNSDSSRPSLDNVRCTGDNWSNAVHSSRVHLNTIPSSNLSNVATSYHSQLRDNTTSALHIGNCLSDISSITSISTQSHDSRIDSQRQAATTSNRFDQMISKVPVQDWNDHKEDSYYHTTMACSSSNSLIPVNGAAETLPKRLENQNIIFSSSKDFNVTSQANVLDHAMVEHDQFKKSTMETSLMLKQGYLYDHQQKMQSRLSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDNYPIGTCM 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30211195 30215501 - CrPI670011_05g018110.1 Cre05g1811 498324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1811 689 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Cre05g1811 689 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677(InterPro)
Cre05g1811 689 MobiDBLite consensus disorder prediction 141 180 - -
Cre05g1811 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 378 IPR045279 GO:0009736(InterPro)
Cre05g1811 689 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Cre05g1811 689 FunFam Two-component response regulator 193 256 - -
Cre05g1811 689 Gene3D - 193 256 - -
Cre05g1811 689 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Cre05g1811 689 FunFam Two-component response regulator 18 176 - -
Cre05g1811 689 PIRSF RR_ARR_type-B 1 689 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cre05g1811 689 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Cre05g1811 689 CDD REC_typeB_ARR-like 20 134 - -
Cre05g1811 689 MobiDBLite consensus disorder prediction 141 196 - -
Cre05g1811 689 MobiDBLite consensus disorder prediction 437 457 - -
Cre05g1811 689 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Cre05g1811 689 Gene3D - 17 152 - -
Cre05g1811 689 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Cre05g1811 689 SUPERFAMILY CheY-like 16 142 IPR011006 -
Cre05g1811 689 MobiDBLite consensus disorder prediction 432 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0777 Cre-Chr5:6852882 Cre05g1811 Cre-Chr5:30211195 6.80E-87 dispersed
Cre05g1811 Cre-Chr5:30211195 Cre06g1238 Cre-Chr6:6289075 3.20E-87 dispersed
Cre11g0834 Cre-Chr11:5529015 Cre05g1811 Cre-Chr5:30211195 1.80E-108 wgd
Cre05g1811 Cre-Chr5:30211195 Cre06g2086 Cre-Chr6:28618326 7.70E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53718 PF00072 Response_reg 8.90E-23 CL0304 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1811 K14491 - csv:101215220 1275.0