Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1816 ATGGCCAGACCGCAAAAGCGCTACCGTGGTGTAAGACAAAGGCATTGGGGCTCTTGGGTTTCTGAAATTCGTCATCCTTTATTGAAAACAAGAATTTGGCTGGGAACATTTGAAACCGCGGAAGATGCTGCGAGAGCTTATGATGAAGCTGCAAGATTAATGTGTGGCCCAAAAGCAAGAACGAACTTTCCATACAATCCAAATGCAATTCAATCCTCGAATTCGAGGATTTTATCGGCTAATTTGACTGCGAAATTGCATAGGTGTTATATGGCTTCTTTGCAGATTAGTAACCAAGCTTCAGGGGAGTTTAAAAGAGACATTCCGGCGGTATTTCCGGCATCAACGCCGCTACCTCATGCGGTTGTTGGCGCCGGTGTGGCGAGTTCGGCGGTGGAGGAGATTGGACCGGCGGCGGAGCAAGGGCCGTGTGCGGCGGATTGGATGGTGAGAAGTGTGAAAATGGAAAGTGAATTTGGGGAGTTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAACTTCTTTATTATGGATCCATGGAGTTTTGTCTGTGA 564 46.63 MARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNAIQSSNSRILSANLTAKLHRCYMASLQISNQASGEFKRDIPAVFPASTPLPHAVVGAGVASSAVEEIGPAAEQGPCAADWMVRSVKMESEFGELKLLEDDHIEQMIEELLYYGSMEFCL 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30276361 30277004 - CrPI670011_05g018160.1 Cre05g1816 498329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1816 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g1816 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 111 IPR050913 -
Cre05g1816 187 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cre05g1816 187 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g1816 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g1816 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g1816 187 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g1816 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cre05g1816 187 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g1816 187 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1816 Cre-Chr5:30276361 Cre08g1304 Cre-Chr8:26119715 4.50E-52 dispersed
Cre05g1816 Cre-Chr5:30276361 Cre07g1601 Cre-Chr7:31494092 2.80E-38 wgd
Cre05g1816 Cre-Chr5:30276361 Cre08g1303 Cre-Chr8:26112391 9.00E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53720 PF00847 AP2 6.80E-12 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1816 - - - 0.0