Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1822 ATGGATCAAGGAATTCCCTCTTTCGTGGTCCCCAGTTTTCTTCATCCACGTGTCCTCTTCTCATTCGCTTATCTCAAGCGTGCCTCCTTAGCGGTCCCCACAAGTGGTCCAAACGACCACAGCGCGACGCGTGTCGACCGGTCGTTGTCCCGCGAGTGGCGGAGAGAGAACCGACGTAATCAATGGTCCCCCCTACAGATCCACCGCCATGGCTACATAATCACTGACCCATTTCTCAAATACCTCGTTTCCTTCTCTCTCCCCTTTCCCATGGCGTATCACAATCACCTCTCACAAGATCTTCCGCTTCACTTCTCTGACCACCACCAAAATCAGCCTCTCTCTGATACTTCTCTCCGTACCATTTTGCCGGACCAACTTCCCGGCGCCCACTCCTCACCGGACCCCAAGTCTCACCAACCCCATCACCACCATCACCATCATCCACTTCAGACGGCACCGAATTGGCTCAACAACGCACTTCTTCGCAACCAAAACCCCCATTCTCACTACTCTACCGACACCACCGCCACCGCCGCCGCCGCGGCCAATACTAATTTCCTTAACCTTCACACCACTGCATCCGATTCCACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGCCCGATCCTCCACCGTAACCACAGCGATGTCATCGACGATGTCGCCGCTGCCGCTGCCGGTGATGCTATGATCGGTGCTGCCACTGCTGCGCTCTCTCACGATTCTGGCGACATGAAGAACGATGCTAATAGCGGGGATGGATTGAACAAGAGCGAGGGTATGGTGATGGAAACTGGTGCCGGCGGTGAAGGGGTTTTGAATTGGCAACATGCTCGTTATAAAGCTGAGATTCTTGCTCATCCTCTTTACGAGCAGCTTCTTTCCGCTCATGTCGCTTGCCTTCGCATCGCAACGCCGGTCGATCAATTACCAAGGATCGATGCACAGCTCGCTCAGTCGCAGAATGTCGTCGCTAAGTACTCCGCCTTGGGCCACTCCGCTCCGCCGTCCATGGTTGGTGATGATAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTTTTGCTTTGTTCATTCAAAGAACAACTTCAACAACATGTTCGAGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCACCAGGTGAAGGTACAGGAGCAACAATGTCGGACGACGACGACGACCAAGTCGACAGCGATGCAAATCTGTTCGATGGAAGTTTAGAGGGTCCAGACACCATGGGGTTCGGCCCTCTTATTCCCACAGAGAGCGAGAGATCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCTAAATGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGCCTACAACTGAAACAGATAAACAATTGGTTCATTAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAAGTTCAACAAACTTGAAAAGCAAACGCAAAAGAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA 1677 50.75 MDQGIPSFVVPSFLHPRVLFSFAYLKRASLAVPTSGPNDHSATRVDRSLSREWRRENRRNQWSPLQIHRHGYIITDPFLKYLVSFSLPFPMAYHNHLSQDLPLHFSDHHQNQPLSDTSLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETGAGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPPSMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRSNAGENSSDRFK 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30367275 30375658 + CrPI670011_05g018220.1 Cre05g1822 498335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1822 558 ProSiteProfiles 'Homeobox' domain profile. 469 532 IPR001356 GO:0003677(InterPro)
Cre05g1822 558 Pfam ELK domain 449 470 IPR005539 GO:0003677(InterPro)
Cre05g1822 558 SMART KNOX2_2 337 392 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre05g1822 558 SUPERFAMILY Homeodomain-like 471 535 IPR009057 -
Cre05g1822 558 Gene3D - 470 531 - -
Cre05g1822 558 Pfam KNOX1 domain 282 323 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre05g1822 558 Pfam Homeobox KN domain 489 528 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre05g1822 558 FunFam homeobox protein knotted-1-like 3 isoform X1 470 531 - -
Cre05g1822 558 Pfam KNOX2 domain 341 391 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre05g1822 558 MobiDBLite consensus disorder prediction 544 558 - -
Cre05g1822 558 SMART ELK_2 449 470 IPR005539 GO:0003677(InterPro)
Cre05g1822 558 MobiDBLite consensus disorder prediction 391 410 - -
Cre05g1822 558 ProSiteProfiles ELK domain profile. 449 469 IPR005539 GO:0003677(InterPro)
Cre05g1822 558 MobiDBLite consensus disorder prediction 526 558 - -
Cre05g1822 558 MobiDBLite consensus disorder prediction 123 152 - -
Cre05g1822 558 CDD homeodomain 472 533 IPR001356 GO:0003677(InterPro)
Cre05g1822 558 SMART KNOX1_2 280 324 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre05g1822 558 MobiDBLite consensus disorder prediction 526 543 - -
Cre05g1822 558 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 228 540 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre05g1822 558 SMART HOX_1 471 536 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1822 Cre-Chr5:30367275 Cre05g1932 Cre-Chr5:31489712 5.40E-29 dispersed
Cre09g2201 Cre-Chr9:41135487 Cre05g1822 Cre-Chr5:30367275 2.50E-105 transposed
Cre05g1822 Cre-Chr5:30367275 Cre08g1299 Cre-Chr8:26057183 1.00E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53721 PF03791 KNOX2 2.50E-21 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1822 - - - 0.0