Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1825 ATGGGGAAGCCAACGGGAAAGAAGAAGGAAAATTTTGGGGAGAAGCCTGGAAATGCTAATTCTAAGACTGCTCGGCCGTCTGACCGAAACTCCAAGGCGTTCGATGAAGACACGGCCATCTTCATAAACATGTCCCAAGAGCTTAAGGAAGAAGGCAACCGGCTATTTCAGAAACGAGATCATGAAGGCGCCATGTTGAAATATGAGAAAGCTCTTAAGCTTTTGCCGAGAAATCATATTGATGTTGCTCATCTCCATAGCAACATGGCTGCTTGTTATATGCAGTTGGGATTGGGAGAGTATCCACGGGCGATTAACGAGTGCAATTTGGCTTTGGAGGCTCATCCAAGGTACAGCAAGGCGCTGCTGAAGAGAGCGAGGTGTTACGAGGCTTTGAGCCGGTTTGATTTGGCGTTGAGAGATGTGAATACTGTTTTGAGCTTGGAGGCTAATAACCTCTCTGCGTTGGAGATTTTGGATAGTGTCAAAAACACGATGAGAGAAAAGGGTGTTGATGTTGATGAGAAAGAAATCGGGTTGGGCATCGTAAAGCTACCTCCCGCAGCACATCTGCGAAAGGTAGTTAGAGAGAAACTAAGGAAGAAGAAGAATAAGAAAATTGAGGAAAAGACAGATGATAAGTTGATTGTAGAGGAGAAGGTTGATCAGGTGATTCAGGTTGATCAGGTTGAAGATAAGGAAGTTACAAAAAATACTATTGAGGAAGACAAATTGTTCGTTGAACCGATCGAGGAAAAACCAGTCTCAAAGACAGTGAAGTTAGTATTTGGAGAAGACATAAGATGGGCGCAGTTACCTACAAATTGCACCATGAAATTGGTGAGCGAGATAGTTCGAGACAGATTTCCAAGCTTGAAGGGTGTTCTTGTGAAGTACAGAGATCAAGAGGGTGATTTGGTAACGATTACTACGACTGAGGAGTTGAGGTCGGTTGAATCATCTAGTCAGCTGCAGAGTTCACTTAGACTTTACATCACAGAGGTCAGTCCTGATCAGGAACCTTCCTACAAGGAAATCAAAAACGAGGAGAAGCTTCCAGAGGTTGATAAAAGAAGAAATGCAGTGGTGGTGAATGGAGATTCAGAAAATGATAAAGAGGTTGTCAGGGCTACGACTACGGTTGAGGACTGGATAGTCCAGTTTGCACGATTGTTCAAGAACCATGTTGGGGTTGATTCTGATTCATACTTGGATCTTCACGAGCTTGGAATGAAGCTGTACTCGGAAGCGATGGAGGACTCCATAACAGGAGACAGTGCACAGGAACTTTTTGAAATCGCTGCTGACAAGTTTCAAGAAATGGCAGCTCTGGCATTCTTCAACTGGGGCAATGTTCACATGTCCAGAGCAAGGAAGCAGGTTTTCTTTCCAGAAGACAGTTCGAGAGAAACTTTACTTCTTCGGATTAAGGATGCATACGAGTGGGCACGAAAAGAATACAAAAAGGCTGAAATGAGATACGAAGAAGCTTTAAATGTAAAACCTGACTTCTATGAAGGTTTCCTTGCACTTGGGCAGCAGCAGTTTGAGCAAGCCAAGCTTTGCTGGTATTATGCAATTGCTAGCGGAAGCAAAATCGATTTGGAATCGAGCTTCTCCACGGAGGTCTTACAACTTTATAACAAGGCTGAGGACAGCATGGAGAAGGGTATGCTGATGTGGGAAGAAATGGAGGAGCAGCGCCTGAATGGACTCTCCAAAAGTGAAAAATACAGATCTGAGTTGCAAAAAATGGGATTGGAAAGACTATTCAGTGAGATACCTGCTGATGAAGCTGCAGAGCTGGCTTCAAACATGAGATCACAGATATATCTTTTATGGGGAACCTTATTGTACGAGCGTTCTGTCGTGGAATATAAGATTGAACTACCAACCTGGGAGGAATGTTTGGAAGTATCGGTGGAAAAATTCGAACTTGCTGGTGCTTCCCAAACAGATATTGCAGTTATGATAAAGAATCATTGTTCCAATGAAACTGCACTGGAAGGTTTCGGGTTCAAAATCGATGAGATCGTACAGGCATGGAACGAAATGTATGATGCTAAAAGTTTTCTTTGCATCAAATTTTCTGGTGTTCTGCTTCCCACAAAGATAAAAGTTGTTCTGCACCAGCGGTTTTCGTTTCAATTTGTCGTTTACATGGTCAGAGTGTTTGCTCAGATCGTCCTTAATCAACGGATGCCGATGATCTCTCTTCCTCTACGGCGGTCAATCGATATGCCTTATGGCTTACGTCATCTACAGTACAGTGTTGATGGCTGGGATCTAGCATGTTTTGTTGTCATGGTACATTTCGAATTACAGTCAGTGGAAGAAATTTTGTTAGCATAG 2352 43.24 MGKPTGKKKENFGEKPGNANSKTARPSDRNSKAFDEDTAIFINMSQELKEEGNRLFQKRDHEGAMLKYEKALKLLPRNHIDVAHLHSNMAACYMQLGLGEYPRAINECNLALEAHPRYSKALLKRARCYEALSRFDLALRDVNTVLSLEANNLSALEILDSVKNTMREKGVDVDEKEIGLGIVKLPPAAHLRKVVREKLRKKKNKKIEEKTDDKLIVEEKVDQVIQVDQVEDKEVTKNTIEEDKLFVEPIEEKPVSKTVKLVFGEDIRWAQLPTNCTMKLVSEIVRDRFPSLKGVLVKYRDQEGDLVTITTTEELRSVESSSQLQSSLRLYITEVSPDQEPSYKEIKNEEKLPEVDKRRNAVVVNGDSENDKEVVRATTTVEDWIVQFARLFKNHVGVDSDSYLDLHELGMKLYSEAMEDSITGDSAQELFEIAADKFQEMAALAFFNWGNVHMSRARKQVFFPEDSSRETLLLRIKDAYEWARKEYKKAEMRYEEALNVKPDFYEGFLALGQQQFEQAKLCWYYAIASGSKIDLESSFSTEVLQLYNKAEDSMEKGMLMWEEMEEQRLNGLSKSEKYRSELQKMGLERLFSEIPADEAAELASNMRSQIYLLWGTLLYERSVVEYKIELPTWEECLEVSVEKFELAGASQTDIAVMIKNHCSNETALEGFGFKIDEIVQAWNEMYDAKSFLCIKFSGVLLPTKIKVVLHQRFSFQFVVYMVRVFAQIVLNQRMPMISLPLRRSIDMPYGLRHLQYSVDGWDLACFVVMVHFELQSVEEILLA 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30412395 30416951 - CrPI670011_05g018250.1 Cre05g1825 498338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1825 783 SMART PB1_new 256 335 IPR000270 GO:0005515(InterPro)
Cre05g1825 783 Gene3D - 256 336 - -
Cre05g1825 783 ProSiteProfiles PB1 domain profile. 256 335 IPR053793 -
Cre05g1825 783 MobiDBLite consensus disorder prediction 1 33 - -
Cre05g1825 783 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515(InterPro)
Cre05g1825 783 SMART tpr_5 45 78 IPR019734 GO:0005515(InterPro)
Cre05g1825 783 SMART tpr_5 471 504 IPR019734 GO:0005515(InterPro)
Cre05g1825 783 SMART tpr_5 119 152 IPR019734 GO:0005515(InterPro)
Cre05g1825 783 SMART tpr_5 83 118 IPR019734 GO:0005515(InterPro)
Cre05g1825 783 SUPERFAMILY CAD & PB1 domains 245 347 - -
Cre05g1825 783 Coils Coil 480 500 - -
Cre05g1825 783 PANTHER PROTEIN CLMP1 1 690 IPR044517 -
Cre05g1825 783 MobiDBLite consensus disorder prediction 1 15 - -
Cre05g1825 783 Pfam PB1 domain 258 333 IPR000270 GO:0005515(InterPro)
Cre05g1825 783 Gene3D Tetratricopeptide repeat domain 43 171 IPR011990 GO:0005515(InterPro)
Cre05g1825 783 SUPERFAMILY TPR-like 34 162 IPR011990 GO:0005515(InterPro)
Cre05g1825 783 CDD PB1 258 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1825 K26538 - - csv:101217917 1244.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0880 Cre-Chr1:11966664 Cre05g1825 Cre-Chr5:30412395 3.80E-129 transposed
Cre05g1825 Cre-Chr5:30412395 Cre06g2055 Cre-Chr6:28271094 6.50E-214 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g554 . . . . . . . . . . Cma01g01489 . . . . . . . . . . . . . Cla05g01710 Cam05g1825 Cec05g1837 Cco05g1895 Clacu05g1810 Cmu05g1696 Cre05g1825 . . . . Lsi04g02102 . . . . . . Bda13g01251 . . . . Sed13g1998 Cmo01g01543 . . . . . . . Bhi09g02959 Tan01g3607 Cmetu07g2079 . Hepe01g1993 . . . . . . . . . . . . Cme07g00090
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006619 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 2 37