Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1836 ATGAAGAAAATCCGATCCACTCTATGCAGAAAGAGACGCAAAACCAAAGAAAAGAACCAATTCTTCTTCTTCTTCTTCTTCCAACGTCCAAATTCCGATCATGGAACAAATCTTCACTCACACATTCTTCTCTTCCGCCATTTCTTCATTGCCTTCCCGTCTCTCTCCGAATCTTTCCTTATGTCGTTCTTTTCTGGTATCTTCCTCGGCGTTGTTGTCGGAGTCCTACTCATTATCGCTCTTGCTCGCGCCGGAAATGTTCGCGCCAAGCATCGCTCCGATTTGGCTACGACTATTGCGGCATTTGCAAGGATGACGGCACAGGATTCGAGAAAAATTCTTCCCAAGGAGTTTTATCCGTCGTGGGTCGTATTTACGCAGCGACAGAAGTTAACTTGGCTCAATCTTCAGCTTGATAAAATCTGGCCATATGTTGACGCGGCAGCATCGGAACTGATAAGGAGCAATGTGGAGCCGGTTCTAGAACAATTTCGACCGGCGATATTATCTTCTTTGAAGTTCTCAAAGTTGACCCTGGGTACTGTCGCTCCACATTTTACAGGAATTGCTGTACTTGAAGACGAGCCTGAATCCGGGGGAATAACTTTGGAGTTGGAGATGCAATGGGATGGTAATCCAAACATTGTTCTTGACATCAAAACTAAACTCGGCGTTTCTTTACCAGTACAGGTAAAAGATATTGCATTCACAGGGCTTTTCAGATTAATGTTCAAGCCATTGGTTGATGAGTTTCCTTGCTTTGGAGCAGTGTGTTATTCTCTGAGGAAAAAGAAAAATCTTGATTTTAAACTTAAGATTGTTGGAGGAGATATATCATCTATTCCTGGGGTTTCTGATGCTATTGAGGAAACAATTCGAGATGCTATCGAAGGTACTATAACGTGGCCTGTTCGGATGATTGTGCCCATCATAGCAGGAGATTATAGCGATTTAGAGGCAAAGCCTGTTGGAACATTAGAAGTGAAGCTCGTGCAGGCAAAGGAATTAACCAATAAAGACATTATAGGAAAGTCAGATCCTTATGCTGTGCTGTTTTTACGGCCATTGAAAGAGAGAATGAAAACAAGTAAAACCATTAATAATCAATTGAATCCCATATGGAATGAGCACTTTGATTTCATTGTTGAAGATGCATCTACTCAGCACTTGACTATAAGAATTTTTGACGATGAAGGAGTTCAGGCCTCTGAACTAATTGGCTGTGCTCAAGTAGCACTAAAAGACCTCGAGCCCGGTAAAGTGAAGGATGTTTGGTTGAAGCTGGTCAAAGATTTGGACATCCAAAGAGATAACAAATACAGGGGTCAGGTGCATTTGGAGCTTCTTTACTATCCCTTCGGCACTGATCAGAGCCTCTATATAAACCCATTTAACCCAGATTATGCATTGACCTCAGTGGAGAAGGCTCTAAAAACGGCTCCGAATGGCTCAGAAGATGCAGATTCTGGAAAACCAAGCTCCCCAAAGAAGAGGGATATGATTGTAAGAGGAGTGTTATCCGTGACAGTAATAGCTGCTGAAGATTTGCCTGCTGTAGATTTCATGGGAAAAGCTGACCCTTACGTTGTTCTCATTATGAAGAAATCCGAGACCAAAGTTAAAACCAGGGTTGTACATGACACCCTGAATCCTGTCTGGAATCAAACATTCGACTTTCTGGTGGAGGATGCATTACACGATATGCTAATGGTAGAGGTCTGGGATCATGACACTTTTGGAAAGGATAAACTGGGGAGGGTCATAATGACATTGACAAGAGCGATATTGGAAGGGGAAATTCAGGACTGTTTTCCACTGGAAGGAGCCAAATCAGGACGTGTTTATCTGCATCTCAAATGGGCAGCTCAGCCAATTTTCCGAGATATTTGA 1890 42.7 MKKIRSTLCRKRRKTKEKNQFFFFFFFQRPNSDHGTNLHSHILLFRHFFIAFPSLSESFLMSFFSGIFLGVVVGVLLIIALARAGNVRAKHRSDLATTIAAFARMTAQDSRKILPKEFYPSWVVFTQRQKLTWLNLQLDKIWPYVDAAASELIRSNVEPVLEQFRPAILSSLKFSKLTLGTVAPHFTGIAVLEDEPESGGITLELEMQWDGNPNIVLDIKTKLGVSLPVQVKDIAFTGLFRLMFKPLVDEFPCFGAVCYSLRKKKNLDFKLKIVGGDISSIPGVSDAIEETIRDAIEGTITWPVRMIVPIIAGDYSDLEAKPVGTLEVKLVQAKELTNKDIIGKSDPYAVLFLRPLKERMKTSKTINNQLNPIWNEHFDFIVEDASTQHLTIRIFDDEGVQASELIGCAQVALKDLEPGKVKDVWLKLVKDLDIQRDNKYRGQVHLELLYYPFGTDQSLYINPFNPDYALTSVEKALKTAPNGSEDADSGKPSSPKKRDMIVRGVLSVTVIAAEDLPAVDFMGKADPYVVLIMKKSETKVKTRVVHDTLNPVWNQTFDFLVEDALHDMLMVEVWDHDTFGKDKLGRVIMTLTRAILEGEIQDCFPLEGAKSGRVYLHLKWAAQPIFRDI 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30533494 30537427 + CrPI670011_05g018360.1 Cre05g1836 498349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1836 629 SMART C2_3c 505 603 IPR000008 -
Cre05g1836 629 SMART C2_3c 325 425 IPR000008 -
Cre05g1836 629 CDD SMP_SYT 120 310 - -
Cre05g1836 629 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 322 453 IPR035892 -
Cre05g1836 629 Gene3D C2 domain 320 460 IPR035892 -
Cre05g1836 629 FunFam Plant synaptotagmin 319 460 - -
Cre05g1836 629 ProSiteProfiles C2 domain profile. 305 426 IPR000008 -
Cre05g1836 629 Gene3D C2 domain 492 622 IPR035892 -
Cre05g1836 629 FunFam Extended synaptotagmin-2 485 624 - -
Cre05g1836 629 ProSiteProfiles C2 domain profile. 488 604 IPR000008 -
Cre05g1836 629 CDD C2 326 428 - -
Cre05g1836 629 CDD C2 506 606 - -
Cre05g1836 629 PRINTS C2 domain signature 521 533 IPR000008 -
Cre05g1836 629 PRINTS C2 domain signature 547 560 IPR000008 -
Cre05g1836 629 PRINTS C2 domain signature 569 577 IPR000008 -
Cre05g1836 629 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 62 623 IPR045050 GO:0005783(PANTHER)|GO:0008289(InterPro)
Cre05g1836 629 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 130 311 IPR039010 -
Cre05g1836 629 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 127 311 IPR031468 GO:0008289(InterPro)
Cre05g1836 629 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 503 620 IPR035892 -
Cre05g1836 629 Pfam C2 domain 324 428 IPR000008 -
Cre05g1836 629 Pfam C2 domain 504 601 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1836 K28063 - - csv:101210249 1055.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1836 Cre-Chr5:30533494 Cre06g0803 Cre-Chr6:1389925 4.50E-72 dispersed
Cre11g0815 Cre-Chr11:5414870 Cre05g1836 Cre-Chr5:30533494 2.40E-234 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g506 . Blo12g01070 . . . . Bma04g00074 . . . Cma01g01516 . Car09g00389 . . . Cpe06g00325 . . . . . . . Cla05g01721 . Cec05g1847 Cco05g1905 Clacu05g1821 Cmu05g1705 Cre05g1836 Cone4ag1772 . . . Lsi04g02114 Csa03g04318 Chy04g00382 . . . . . . Bpe04g00063 . . Sed13g2010 Cmo01g01569 Cmo09g00449 Cma09g00440 . . . . Cpe02g00441 Bhi09g02220 Tan01g3623 Cmetu04g2724 . Hepe01g2006 Mch11g0542 . . . . . . . . . . . Cme04g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001676 3 3 3 2 3 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 1 2 2 2 2 2 2 2 2 70