Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1858 ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAGATTCGCCACCCACTGCTGAAGAGAAGGGTGTGGCTGGGGACATTTGACACAGCAGAGGATGCAGCTCGAGCGTATGATCAAGCAGCCATTTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCTAAAGACCAATCTGAAGAAGCTAGCCATGGCCATGGTTCTTCTCCGATGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAATCCATCTCCCTCATTGACATGCCTGCGGCTCGACAGTGACAACGCTCACATCGGCGTATGGCAGAAGCGTGCAGGCACTCGAGCAACCTCTAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGATACCGTCCCCCTCCCTGTCGCCTGAATCAACAAGCCAGGAAGCTGATGACCATGGGAATGGAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCTACTTCAAGCTAA 573 49.91 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPSLSPESTSQEADDHGNGIDEEDRIAMQMIEELLNWNCPLPSTSS 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30739769 30740933 + CrPI670011_05g018580.1 Cre05g1858 498371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1858 190 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cre05g1858 190 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g1858 190 MobiDBLite consensus disorder prediction 142 167 - -
Cre05g1858 190 MobiDBLite consensus disorder prediction 59 84 - -
Cre05g1858 190 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g1858 190 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g1858 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 134 IPR050913 -
Cre05g1858 190 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g1858 190 CDD AP2 6 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g1858 190 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g1858 190 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Cre05g1858 190 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1858 Cre-Chr5:30739769 Cre07g1627 Cre-Chr7:31748616 6.50E-51 dispersed
Cre11g0788 Cre-Chr11:5085775 Cre05g1858 Cre-Chr5:30739769 6.30E-54 wgd
Cre05g1858 Cre-Chr5:30739769 Cre06g1979 Cre-Chr6:27189274 1.20E-55 wgd
Cre05g1858 Cre-Chr5:30739769 Cre07g1559 Cre-Chr7:31000069 2.00E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53724 PF00847 AP2 3.80E-13 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1858 - - - 0.0