Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1865 ATGAACACTCGCCACGTCATCAACTACCAAAATATCAGAAAATCCCGTGGCTTACTGAGCCGAGTCGAGCCGTTTAGAGCACAATGGAAACCAGTCGATCCGGTAATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAGAGGAATGAACTTGTTCGGATTCGCCACGATTCCGATAGTGGGCCTAAACCTCTGAAGAATTTAAACAGCCAAACATGTCAAATATGTGGCGACACAGTTGGTCTTACGGCCTCTGGCGATGTCTTTGTTGCTTGCAATGAATGTGCCTTTCCTGTTTGTCGTCCTTGTTATGAGTATGAGAGGAAAGATGGAAACCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGCCCTCGCGTTGATGGTGATGATGATGAGGATGATGTGGATGACATTGAGAATGAGTTTAATTACGTCCAAGGAAGTGGCAAGACAAAACGACAGTGGCATGGGGAAGATGTTGAACTATCTACTTCTGCGAGACATGAGTCTCAACAGCCTATACCACTCCTGACAAATGGCCAATCAGTGTCGGGCGAAATTCCTTGTGCTACCCCTGACAATCAATCAGTGCGAACCACATCTGGTCCTTTGGGTCCTCCAGAAAAGCATATGCAATCCCATCCATATGTTGACCCACGGCAGCCAGTTCCTGTGAGAATTGTAGACCCATCAAAGGATTTGAATTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAACTGAAACAAGAGAAAAACATAATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAGGGCACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGACAACCTTTGAGTCGTGTCGTTCCTATTCCATCCTCTCACTTGACCCCGTATCGTGTTGTGATCATACTTCGTCTTATTATTCTGGGCTTCTTCTTACAGTACCGTTTGACACACCCTGTGAAGGATGCATACCCCCTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCCCTTTCCTGGCTCCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGCGAGACCTTCCTTGAGAGACTTGCGCTAAGATATGATCGTGAAGGAGAACCATCACAGTTAGCTCCTGTTGATGTCTTTGTCAGTACAGTGGATCCACTCAAAGAGCCTCCACTTGTCACAGCAAACACTGTGCTTTCCATACTTGCTGTGGACTACCCTGTGGACAAAGTCTCCTGCTATGTATCAGATGATGGTTCAGCAATGCTTACTTTTGAAGCGCTCTCTGAAACTGCGGAATTTGCAAGGAAGTGGGTGCCCTTTTGCAAGAAGCACAACATTGAGCCGAGAGCCCCTGAATTTTATTTTGCTCAAAAAATAGATTACTTGAAGGACAAGATTAAACCTTCTTTTGTCAAAGAGAGGCGAGCAATGAAGAGAGAGTATGAAGAATTCAAGATTCGGATCAATGCGCTTGTTGCCAAAGCACAAAAGATGCCCGAGGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGCCACAGTGGAGGTCTTGATACTGATGGCAATGAACTACCACGACTTGTTTATGTTTCTCGTGAGAAGCGACCTGGTTTCCAGCACCACAAGAAAGCCGGAGCCATGAATGCATTGATCCGAGTTTCTGCTGTGCTTACTAATGGAGCATATCTATTGAATGTCGATTGTGATCACTACTTCAACAACAGCAAAGCTCTCAAGGAAGCCATGTGTTTCATGATGGACCCTGCTTATGGGAAGAAAACATGTTATGTACAGTTCCCACAACGTTTTGATGGCATTGATTTGCACGATCGATATGCCAATCGCAACATTGTCTTTTTTGACATAAACTTGAAAGGGTTGGATGGCCTCCAGGGTCCAGTCTATGTGGGAACTGGTTGTTGTTTCAATCGGCAAGCTTTATATGGTTATGATCCAGTTCTGACTGAGGCAGATTTGGAACCGAATATTATCATTAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAGGAACAAGAAGTACATCGACAAAAAGAGGGCTGCAAAGAGGACTGAATCTACCATTCCTATCTTTAATATGGAAGATATTGAGGAAGGCGTTGAAGGATATGATGATGAGAGGTCACTCCTGATGTCTCAGAAGAGTTTAGAGAAGCGCTTTGGCCAATCTCCAGTTTTTATTGCAGCCACTTTCATGGAACAGGGAGGTATTCCACCTTCCACCAATCCTGCAACTCTTCTAAAGGAAGCAATTCATGTTATCAGTTGTGGATATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTGACTGGGTTTAAGATGCATGCTCGCGGGTGGATATCAATTTACTGCATGCCTCCACGCCCGGCATTCAAGGGATCTGCTCCCATCAATCTTTCTGATCGTTTAAACCAGGTGCTTCGATGGGCTTTGGGTTCCATAGAAATCTTGCTGAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGCTGAAGCTTTTGGAGAGAATAGCATACATCAATACTATCGTCTACCCTATCACCTCAATTCCACTTATTGCTTACTGTATGCTTCCGGCGTTCTGTCTGTTGACTGGAAAGTTCATTATTCCTGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATCTTTGCAACGGGCATTCTTGAACTCAGATGGAGTGGTGTTAGCATTGAAGACTGGTGGAGGAACGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTCGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACTGTGACGTCGAAGGCCAGTGATGATGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCTCCTACCACTGTCCTGATTATGAATATGGTTGGTATAGTGGCTGGTGTATCATATGCCATTAACAGTGGTTACCAGTCTTGGGGTCCTCTCTTTGGTAAGCTGTTCTTTGCATTGTGGGTTATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTGGGAAGGCAAAATCGTACACCGACCATTGTCATTGTCTGGTCCATTCTCCTTGCTTCCATTTTCTCATTGCTCTGGGTGCGAATCGATCCATTTACCTCAGCCTCGACAAAGGCTGCTAACGGTCAATGTGGTATCAATTGCTAG 3354 45.02 MNTRHVINYQNIRKSRGLLSRVEPFRAQWKPVDPVMEANAGLVAGSYKRNELVRIRHDSDSGPKPLKNLNSQTCQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSGKTKRQWHGEDVELSTSARHESQQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMQSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNIMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKIRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30809878 30816094 - CrPI670011_05g018650.1 Cre05g1865 498378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1865 1117 MobiDBLite consensus disorder prediction 195 228 - -
Cre05g1865 1117 FunFam Cellulose synthase 56 147 - -
Cre05g1865 1117 SUPERFAMILY Nucleotide-diphospho-sugar transferases 411 685 IPR029044 -
Cre05g1865 1117 CDD mRING-HC-C4C4_CesA 72 122 - -
Cre05g1865 1117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 147 IPR013083 -
Cre05g1865 1117 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 381 481 IPR029044 -
Cre05g1865 1117 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 551 688 IPR029044 -
Cre05g1865 1117 Pfam Zinc-binding RING-finger 64 141 IPR027934 -
Cre05g1865 1117 SUPERFAMILY RING/U-box 57 146 - -
Cre05g1865 1117 Coils Coil 491 511 - -
Cre05g1865 1117 ProSiteProfiles Zinc finger RING-type profile. 74 120 IPR001841 -
Cre05g1865 1117 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 301 1086 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cre05g1865 1117 FunFam Cellulose synthase 510 684 - -
Cre05g1865 1117 Pfam Cellulose synthase 393 1108 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1865 Cre-Chr5:30809878 Cre09g0394 Cre-Chr9:3874027 0.00E+00 dispersed
Cre05g1865 Cre-Chr5:30809878 Cre02g0541 Cre-Chr2:2525736 1.10E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1865 K10999 - csv:101205724 2199.48