Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1873 ATGCTTCAACATGCAATTCGAACTTTTGAATTTGCTTACAACCTAGAAACAATTTCAGGGACCAACTCGGAGGGTTTGTTTGAGATTTCACTGGATTCACTCTGCAAAGAAGGGCACATCAGGAAGGCTATTGTCGAATGCGTCGTGTTGAAAGCCATTGAATTGGTAGATGAGATTAGGGGAGAATGTATTAAGCCAAATGCAATCATATATAACCCAATAGTTGATGCACTTGGGGAAGCCGGGAGGTTTAAGGAGGCATTGGGAATGATGGAGCGGTTCACGGTTTTGGAGCAAGACCCTACTATCTTAACGTACAATTCTCTTATCAAGAGATTCTTCTCGAAGTATGGTAAAATTGAGGAGGGTATGAACCTTTACAATAAAATGATTGAATCAGGATATGCACCAGATAAACTTATAGATCACTTGTTGTTGAAGATGTTATGTGAAGAGGAGAGATTAAACATTGCAGTTCAAGTTTGCAATGAAATGAAGGCTGTAGGGTTTGACATGGACTTGGCTACAAGCACCATGTTAGTTGATTTGCTTTGCAAGATGCATAAATTTGAAGAAGCTTTTGAAGAATTTAAGCACATGATTTATCGAGGAATTGTTCCTCAATATCTTACTTATTGCATATTGCATGATGAATTTATGAAACGTTGA 669 38.12 MLQHAIRTFEFAYNLETISGTNSEGLFEISLDSLCKEGHIRKAIVECVVLKAIELVDEIRGECIKPNAIIYNPIVDALGEAGRFKEALGMMERFTVLEQDPTILTYNSLIKRFFSKYGKIEEGMNLYNKMIESGYAPDKLIDHLLLKMLCEEERLNIAVQVCNEMKAVGFDMDLATSTMLVDLLCKMHKFEEAFEEFKHMIYRGIVPQYLTYCILHDEFMKR 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30889792 30890749 - CrPI670011_05g018730.1 Cre05g1873 498386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1873 222 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 137 IPR002885 -
Cre05g1873 222 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Cre05g1873 222 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 100 221 - -
Cre05g1873 222 NCBIfam pentatricopeptide repeat 70 93 IPR002885 -
Cre05g1873 222 NCBIfam pentatricopeptide repeat 105 138 IPR002885 -
Cre05g1873 222 Pfam PPR repeat 176 205 IPR002885 -
Cre05g1873 222 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Cre05g1873 222 Pfam Pentatricopeptide repeat domain 55 112 IPR002885 -
Cre05g1873 222 Gene3D Tetratricopeptide repeat domain 98 166 IPR011990 GO:0005515(InterPro)
Cre05g1873 222 Gene3D Tetratricopeptide repeat domain 167 222 IPR011990 GO:0005515(InterPro)
Cre05g1873 222 Gene3D Tetratricopeptide repeat domain 23 97 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1873 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1873 Cre-Chr5:30889792 Cre05g1877 Cre-Chr5:30912125 8.30E-13 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g433 Blo01g01369 . . . . . . . . . Cma01g01524 . . . . . . . . . . . . . Cla05g01756 . Cec05g1882 . Clacu05g1862 Cmu05g1743 Cre05g1873 . . . . Lsi04g02154 . . . . . . . . . . . . Cmo01g01576 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016440 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 6