Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1876 ATGTCCGCCTCGAACATGGCGGCATCTCTAAGCTCTTGGTCCCACGCGCTCGTCAGAATCTCCCCATACACCTTCTCCGCCATCGGCATTGCCATAGCCATCGGCGTCTCTGTCCTCGGAGCCGCCTGGGGGATCTACATAACCGGAAGCAGTTTGATCGGTGCTGCAATCAAAGCTCCGCGTATTACCTCGAAGAATTTAATTAGTGTAATTTTCTGTGAAGCAGTGGCCATATATGGTGTCATTGTAGCCATCATTCTACAAACAAAACTGGAGACTGTTTCACCATCTCAAATTTATGCTCCTGAGTCTCTAAGAGCAGGATATTCAATTTTTGCTTCTGGGATTATCGTCGGCTTTGCCAATCTTGTTTGCGGGTTGTGTGTAGGGATTATTGGCAGCAGTTGTGCATTATCTGATGCCCAAAACTCATCTCTTTTTGTAAAGATTCTTGTGATCGAGATTTTTGGAAGCGCGCTCGGGTTATTTGGTATAATTGTAGGAATAATCATGTCTGCTCAAGCTACATGGCCTGCAAAGGCAGTTTCGTTTGCTAATTGCTTCTGA 567 45.86 MSASNMAASLSSWSHALVRISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLETVSPSQIYAPESLRAGYSIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGIIVGIIMSAQATWPAKAVSFANCF 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30909828 30911181 + CrPI670011_05g018760.1 Cre05g1876 498389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1876 188 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Cre05g1876 188 FunFam V-type proton ATPase proteolipid subunit 23 178 - -
Cre05g1876 188 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 11 175 - GO:0016021(PANTHER)
Cre05g1876 188 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Cre05g1876 188 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Cre05g1876 188 Gene3D - 23 178 IPR035921 -
Cre05g1876 188 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre05g1876 188 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre05g1876 188 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre05g1876 188 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre05g1876 188 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cre05g1876 188 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cre05g1876 188 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1876 Cre-Chr5:30909828 Cre08g1242 Cre-Chr8:25641724 1.60E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1876 K03661 - csv:101205012 304.293