Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1879 ATGAGTAGGGAAAATATTACTGTTCAAGTTGAAGAGTGCTCCGGCAGAATCACAAGAGCACGGGCGAAAGAGCTAAGCGAATCAGGAGGCATTCTATGCTCCTCAAAATCATCTGGAGTTCAGAAACATATTCTACGAACTAACTCAAAAAGAATGGCATCTGATGATATGACGATTTGTTCAATTTCTTCCAATGGCCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGATTTTGATAAGAATTGCAGAAATGCTTCTAACATTCAGGGTGCCAAGCCAACTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGTGCCTTTAAATGCTCCTGTAGAAATTCTAGGTGCAGAAGAAGATGCAAACACAAGACTAGCTGAGGATTTATCTAAAATAAGGGTGGTAGAATCACGAGAAGTCTCTTTAAGAGGAACTTTGGATGGAAAAGAGAGAACCGTGCAAACTACGAGTCACACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGTATCTTCAGAAGAATCTATCCCTCAGCCAAATGAAAAATTTATCGCACCTGAACAATCGGCAGCATTAAGTGATAAAGGTGTTATAGACATTGATTCAAACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGTGTGACAGAGCTTGATCAAAGGGCCTCAACTACCTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTGTCTGAAGAATATAATCTAGTTTCAGATACACTCTATCTCACTGTGAATGTCATCGATCGGTTTCTCTCTCAAAATTATATTGAAAAGAAGCGACTACAACTTGTTGGTGTTGCAAGCATGCTTATTGCATCAAAATATGAGGAGATCTGTGCACCGCGAGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAGCAGAGGTAGTAGAAATGGAGAGTGAAGTTTTGAACTTACTGCACTTTCGGCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTTATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATCGCGGCGTCCGCCGTTTTTCTTGCGAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCACTATACCAGTTACAACGTTTCTCAGCTGAAAACTGCTGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGCTTCGTCGCTAAATGCCATACATCAGAAGTATAGACAACCGAAGTTCAAATGTGTAGCGACGTTAACAGCTACGAAATCGGTTCTATCCCTATTTTGA 1455 40.62 MSRENITVQVEECSGRITRARAKELSESGGILCSSKSSGVQKHILRTNSKRMASDDMTICSISSNGLPNKRRAVLKDVTNISTKDFDKNCRNASNIQGAKPTRRVSAKAKANVPLNAPVEILGAEEDANTRLAEDLSKIRVVESREVSLRGTLDGKERTVQTTSHTSRECGVSDMILSVSSEESIPQPNEKFIAPEQSAALSDKGVIDIDSNSKCLQSCSIYAPDIYDRIRVTELDQRASTTYMEQLQQDITANMRGILVDWLVEVSEEYNLVSDTLYLTVNVIDRFLSQNYIEKKRLQLVGVASMLIASKYEEICAPRVEDFCFITDNTYTKAEVVEMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTSYNVSQLKTAVLALQDLQLNTSASSLNAIHQKYRQPKFKCVATLTATKSVLSLF 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30930794 30935948 + CrPI670011_05g018790.1 Cre05g1879 498392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1879 484 SUPERFAMILY Cyclin-like 217 351 IPR036915 -
Cre05g1879 484 ProSitePatterns Cyclins signature. 256 287 IPR048258 -
Cre05g1879 484 PIRSF Cyclin_A_B_D_E 33 483 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cre05g1879 484 CDD CYCLIN_AtCycA-like_rpt2 354 468 - -
Cre05g1879 484 SMART cyclin_7 358 446 IPR013763 -
Cre05g1879 484 SMART cyclin_7 261 345 IPR013763 -
Cre05g1879 484 SUPERFAMILY Cyclin-like 353 478 IPR036915 -
Cre05g1879 484 Gene3D - 225 473 - -
Cre05g1879 484 Pfam Cyclin, C-terminal domain 354 475 IPR004367 -
Cre05g1879 484 FunFam Cyclin A1 341 473 - -
Cre05g1879 484 Pfam Cyclin, N-terminal domain 225 352 IPR006671 -
Cre05g1879 484 PANTHER CYCLINS 203 465 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre05g1879 484 Gene3D - 239 352 - -
Cre05g1879 484 SMART Cyclin_C_2 354 477 IPR004367 -
Cre05g1879 484 FunFam Mitotic cyclin 6 239 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1879 Cre-Chr5:30930794 Cre09g0228 Cre-Chr9:2391492 2.40E-113 dispersed
Cre02g2568 Cre-Chr2:38953356 Cre05g1879 Cre-Chr5:30930794 2.10E-46 transposed
Cre04g0641 Cre-Chr4:24012467 Cre05g1879 Cre-Chr5:30930794 3.20E-43 transposed
Cre04g1707 Cre-Chr4:35252368 Cre05g1879 Cre-Chr5:30930794 3.20E-48 transposed
Cre11g2261 Cre-Chr11:34371556 Cre05g1879 Cre-Chr5:30930794 6.90E-48 transposed
Cre05g1879 Cre-Chr5:30930794 Cre08g1231 Cre-Chr8:25516459 5.80E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1879 K06627 - csv:101204275 863.988