Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1894 ATGTCGACACCAGTGTCCGAAACAAGGTCGCCGATACCTTTGCTGTTCCGGCGGCACTCAAGTGGCGAAATAAAGAACTTGACGTCGGTTTCCAGCAGCCTCTTGCCGGCGTTTGGAACAGTTGTCAACGATGGATATTCGCACCTGAACAAGTTCGTTATAGTTCCGTATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTAGTGCTAGTGGTGTACTCAGCGTGGGTATCTCCCTTTGAACTTGCCTTCAAGAAAGTGGCAACTGGGTCTCTTTTACCCGTTGATTTGGTGGTGGATGCATTCTTTGCCCTTGATATTTTGTTGACCTTCTTCGTGGCTTACTTGGATAAAGACACCTATCTTCTCGTTGATGATCATAAGAAGATAGCTGTACGTTACCTTACAAGCCTGTGGTTCCCCATGGACGTAGCCTCCACTCTTCCATTTCAGGTGATCTACAGAATTTTCACTGGAAAGATGCACCGCAGTGAGGCCTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGCGTTAGTGAACTCTTCACAAGGCTGGAGAAAGACATACGCTTCAGTTACTTTTTCACAAGACTTGCCAAACTAATTTGTGTTACACTGTTGGCAGTTCATTCAGCTGGTTGTTTCTACTACTGGTTAGCAGTTCATCATAAAGAATCAGCAAACACATGGATTGGACTTGAAGTCGAAGATTTTAAGAACAGAAGTATCTGGCTTGGGTACACCTATTCGATATATTGGTCCATTGTCACACTTACTACTGTTGGTTATGGGGACTTGCATGCAGTCAATCTAGGGGAGAAGATTTTTAGCATCTTCTACATGCTATTCAACATTGGCCTCACATCTTATTTGATAGGAAACATGACAAATCTCATCGTTCACAGTGCTATCCGAACATTCATCATGAGGGATTCCATAAATGAGATATTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCACATGCAACTCAGGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCCCAGCACCTTTTCCGTCATACCGTGGAGAATGCATACTTATTCAAGGGGCTCTCTGAAGACCTTATCGTCCAATTGGTGTCTGAGATGAAAGCAGAGTACTTTCCACCTAAAGTTGACATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGAGCAGTGGATGTGATCTCGTACAGGACTGGAACTGAACAGATTTTGTCAAAGCTGGAATCTCCACAAATGGCAGGAGAAATTGCCGTGATGTTGAATATCCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTCATCAGGATCAGTCATCATCATTTTAAGCAACTGTTACAACCACACAACGAAGATGGAAAAACCATTTTCTCCAAGTTCATTGAGCACTTGAAGGGGTTAAAAAAGGAGGAGCAAAACGAAATACCCTGCTTGTCAGAATTGCTGGAAGACCTAAATACAGAGCACACAGAACTGAACCAGACACAAAATCAGGGAGTACCGAATTATCATGGAGATCAAAAAATGGAAGGATCTGGACCATTTCCACCTACAGCTCGCATCAGGGTGATAATTCACGAGCACCATCCAGATGAAAGTACAAAAGATGGCAACAGTAAGGGAAAACTGGTACTTCTGCCTGAGTCAATTGAAGAACTTTTCGGATTGGCAGAGAAAAGATTTGGCAAGAGAGGGAGCTCAATTCTTATGGCTGATGGCTCTAAAGTAGAAGATTTGAATGTTTTAAGAGAGGGTGATCATTTATTCTTTGTTTGA 1887 43.14 MSTPVSETRSPIPLLFRRHSSGEIKNLTSVSSSLLPAFGTVVNDGYSHLNKFVIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFALDILLTFFVAYLDKDTYLLVDDHKKIAVRYLTSLWFPMDVASTLPFQVIYRIFTGKMHRSEAFGFLNLLRFWRLRRVSELFTRLEKDIRFSYFFTRLAKLICVTLLAVHSAGCFYYWLAVHHKESANTWIGLEVEDFKNRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNLGEKIFSIFYMLFNIGLTSYLIGNMTNLIVHSAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLRFKTAELKQEEVLEDLPKAIRSSIAQHLFRHTVENAYLFKGLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGAVDVISYRTGTEQILSKLESPQMAGEIAVMLNIPQPFTVRTRRLSQVIRISHHHFKQLLQPHNEDGKTIFSKFIEHLKGLKKEEQNEIPCLSELLEDLNTEHTELNQTQNQGVPNYHGDQKMEGSGPFPPTARIRVIIHEHHPDESTKDGNSKGKLVLLPESIEELFGLAEKRFGKRGSSILMADGSKVEDLNVLREGDHLFFV 628
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 31088506 31095972 - CrPI670011_05g018940.1 Cre05g1894 498407
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1894 628 PRINTS EAG/ELK/ERG potassium channel family signature 277 288 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre05g1894 628 PRINTS EAG/ELK/ERG potassium channel family signature 295 304 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre05g1894 628 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre05g1894 628 PRINTS EAG/ELK/ERG potassium channel family signature 251 268 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre05g1894 628 PRINTS EAG/ELK/ERG potassium channel family signature 74 81 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre05g1894 628 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre05g1894 628 ProSiteProfiles KHA domain profile. 559 628 IPR021789 -
Cre05g1894 628 Coils Coil 505 535 - -
Cre05g1894 628 Pfam KHA, dimerisation domain of potassium ion channel 559 627 IPR021789 -
Cre05g1894 628 Gene3D Jelly Rolls 349 513 IPR014710 -
Cre05g1894 628 ProSiteProfiles cAMP/cGMP binding motif profile. 381 500 IPR000595 -
Cre05g1894 628 FunFam Potassium channel KAT2 369 505 - -
Cre05g1894 628 PANTHER POTASSIUM CHANNEL AKT1 23 533 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Cre05g1894 628 FunFam Potassium channel KAT3 63 305 - -
Cre05g1894 628 SUPERFAMILY Voltage-gated potassium channels 56 304 - -
Cre05g1894 628 Gene3D - 63 305 - -
Cre05g1894 628 SMART cnmp_10 381 498 IPR000595 -
Cre05g1894 628 Pfam Ion transport protein 61 305 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g1894 628 CDD CAP_ED 381 486 IPR000595 -
Cre05g1894 628 SUPERFAMILY cAMP-binding domain-like 310 495 IPR018490 -
Cre05g1894 628 Pfam Cyclic nucleotide-binding domain 401 484 IPR000595 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1142 Cre-Chr5:10885745 Cre05g1894 Cre-Chr5:31088506 3.00E-132 dispersed
Cre05g1894 Cre-Chr5:31088506 Cre06g1932 Cre-Chr6:26481846 5.40E-09 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1894 K21867 - csv:101215177 1148.27