Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g1912 | ATGATCGACATCATGAGGGCGACTGTTGAGATGCAGAACACGCACATGGGTAGACTTGCATCTTGGCAGAAGGAAAAGGCGTTACCCTTTTCTTTTTTTCCGATTGTCTCCGAAGAAGGTTGGGGACTGGAAACACACGATTCCTTGTTCGTTGTATGCAATTTCGTCGGAAGAACAGGTGAAAAATGGGGAAATGCATGTGCAGCTCATGATCAGAGTTGGAAAGTGATTTTCATACATTTGGTTGCTCGCTTGAAGTTGCAAAGGCGAAAAATGCCTCGCAAGGTGAGCCATGGGTTAGATTACGATGAAGATTACGATGAGTACGACGATTACGATTATTACGATAACGATTTCGATGCAGAAGAAAAAGTAACAGAAAAAACACCTGAGACTAAGGAAGAAAGAAAGGAGCATAAGCTTTGGCGATGCCCGATTTGCACTTACGACAATGAAGACAGTTTTTCTGTCTGTGATATATGTGGGGTTCTGCGCAACCCTTTGGTCAACAACAGAAATACTCCTGATGATGGAACAGTTGAGAACATCTGCAAAGACTCTGGAGTATCCAAAATGGCCAAGTCTCTCTTTGCATCGTTGCCAAATCAGATACCCAAAAGGGCTGTAAATTTTCAAGAGCAGGACGATAAAATTGTGGAAGAAAGAGAAGAGAACATCCACAAGATTGGAAATATCCGGGGCCATTTGCATGAATTCCATAATGCTTTTAGTACCTGTAGTCATTTCCGTACTAATATAGTCCCCTTCAAGTTTGACATTCCTTCCCCAGATGATGTGGTTTCTAATGGATTGCGTTCCTCGAAAGTTGGTTTAAAAGCAGTCAGCCACAACAACTTCAACTCTTCAATATTATCTTCAGACATCACCAAGAAATCTGCAAATAATGCAGCATTGACTTCAAAAAGTGCACACAGCTCATCTACTGTATTGCCAACGAGCAAATCAGGCAGTATAGGAGATACACAGTTGAGTACCAAAAGTTCAGACAAATCAGGGATATCAATTGGTAAAAGTACAATGGTTAATGAAGAACATAATACATCAATTAGTGTAACAAAAAATTTACAACCACGTGATAACCGGTCGTCAAGCACTTCCACATCAAAGTCAGCAGGCAAATTTGGCAGCATGGATGAGAGCACCAACCCTTCTGTCGAGCGGGAAAAGCCCCAAAGTCTTGCCGGTGGTTTGAACAACATGGTTCTAAATGTCAAATCTGCCTATGCAAATTATATTAGTGGGCTAGGAAAAACATCAAATGCGCAGTATAAGCATGATAAATGGATGCTACCTGATAAAGCTGTAGACACGCTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACACTCTCAGGAAGACTGCTGCACCTATTGGGACGTGTATCCCAAAAAGAAATGCACAAATATGAAAAAGAGGCAAAGTCCCTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTTGGTGTTGCTTATTTTGATTCTAAAAGATATCATGTTGTTGTGCTCGATTCCCCAGGCCATAAAGATTTTGTTCCAAACCTGATATCTGGGGCCACACAAGCTGATGCCGCGGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAGGCTGGTATGGATGGTTCAAAGGGGCAAACAAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATTATTGTTGCAGTTAACAAAATGGATGTGGTGGAGTACTCCAAAGATCGATATGAATTTATTAAGCTGCAACTTGGAACCTTTATTCGTTCATGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGCAAATCAGAATCTAGTGACTGCCCCTTCTGATGTTCAATTTTTGTCCTGGTATCGTGGACCTAGTCTTTTGGAGGCAATTGATTCCCTTCAACCACCCACTCGAGAATTTTGTAAGCCACTGCTTATGCCGATATGTGACGTAGTTAGATCACTTTCACTGGGACAAGTGTCTGCCTGTGGCAAACTGGAAGCTGGAGCTCTCCAATCTGGATCTAAGGTTCTTATCATGCCATCTGGAGATAAAGCAACCGTCCGCACTTTAGAACGCAATTCTCAGGCTTGCAAAATAGCAAGAGCGGGGGACAATGTGACTGTTTCTCTACAAGGAGTTGAAGCAAGTAGCGTGATGGCTGGGGGCGTCCTATGCCATCCTGATTTTCCTGTTGCTGTTGCAAGACATTTGGAATTGAAGATTCTCACCTTGGAATTTGCAACACCGATATTAATAGGATCTCAGTTGGAAATTCATATACACCACGTGAAGGAGGCTGCTAGAGTTTCAAGGATAGTGTCATTACTCGATTCCAAGACGGGAAAGGTCACGAAGAAGGCACCGCGTTGTCTCAGTGCTAAACAAAGTGCAGCGATTGAGGTCGTTTTACAAAGCCCAGTTTGTGTTGAAGCATTCTCAACTAGTCGAGCTCTCGGGCGGGTATTTCTGAGAGCGATGGGTAGAACCATAGCCGTCGGCATTGTAACCCAACTAATCGGAGATCCTGAATAA | 2631 | 42.87 | MIDIMRATVEMQNTHMGRLASWQKEKALPFSFFPIVSEEGWGLETHDSLFVVCNFVGRTGEKWGNACAAHDQSWKVIFIHLVARLKLQRRKMPRKVSHGLDYDEDYDEYDDYDYYDNDFDAEEKVTEKTPETKEERKEHKLWRCPICTYDNEDSFSVCDICGVLRNPLVNNRNTPDDGTVENICKDSGVSKMAKSLFASLPNQIPKRAVNFQEQDDKIVEEREENIHKIGNIRGHLHEFHNAFSTCSHFRTNIVPFKFDIPSPDDVVSNGLRSSKVGLKAVSHNNFNSSILSSDITKKSANNAALTSKSAHSSSTVLPTSKSGSIGDTQLSTKSSDKSGISIGKSTMVNEEHNTSISVTKNLQPRDNRSSSTSTSKSAGKFGSMDESTNPSVEREKPQSLAGGLNNMVLNVKSAYANYISGLGKTSNAQYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDGSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYEFIKLQLGTFIRSCGYKDSSLSWIPLSAMANQNLVTAPSDVQFLSWYRGPSLLEAIDSLQPPTREFCKPLLMPICDVVRSLSLGQVSACGKLEAGALQSGSKVLIMPSGDKATVRTLERNSQACKIARAGDNVTVSLQGVEASSVMAGGVLCHPDFPVAVARHLELKILTLEFATPILIGSQLEIHIHHVKEAARVSRIVSLLDSKTGKVTKKAPRCLSAKQSAAIEVVLQSPVCVEAFSTSRALGRVFLRAMGRTIAVGIVTQLIGDPE | 876 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31287889 | 31298258 | + | CrPI670011_05g019120.1 | Cre05g1912 | 498425 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g1912 | 876 | ProSitePatterns | Zinc finger RanBP2-type signature. | 142 | 161 | IPR001876 | - | |
Cre05g1912 | 876 | Gene3D | - | 439 | 669 | IPR027417 | - | |
Cre05g1912 | 876 | Pfam | Elongation factor Tu domain 2 | 695 | 758 | IPR004161 | GO:0005525(InterPro) | |
Cre05g1912 | 876 | CDD | HBS1_C_III | 763 | 871 | - | - | |
Cre05g1912 | 876 | Gene3D | Translation factors | 766 | 873 | - | - | |
Cre05g1912 | 876 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 445 | 676 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cre05g1912 | 876 | MobiDBLite | consensus disorder prediction | 306 | 400 | - | - | |
Cre05g1912 | 876 | Pfam | Elongation factor Tu GTP binding domain | 448 | 667 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cre05g1912 | 876 | PANTHER | TRANSLATION FACTOR | 446 | 869 | IPR050100 | GO:0003924(PANTHER)|GO:0006412(PANTHER) | |
Cre05g1912 | 876 | PRINTS | GTP-binding elongation factor signature | 528 | 538 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cre05g1912 | 876 | PRINTS | GTP-binding elongation factor signature | 449 | 462 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cre05g1912 | 876 | PRINTS | GTP-binding elongation factor signature | 589 | 598 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cre05g1912 | 876 | PRINTS | GTP-binding elongation factor signature | 544 | 555 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cre05g1912 | 876 | PRINTS | GTP-binding elongation factor signature | 508 | 516 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cre05g1912 | 876 | MobiDBLite | consensus disorder prediction | 306 | 388 | - | - | |
Cre05g1912 | 876 | FunFam | Translation elongation factor EF-1 | 672 | 762 | - | - | |
Cre05g1912 | 876 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 447 | 684 | IPR027417 | - | |
Cre05g1912 | 876 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 769 | 872 | IPR009001 | - | |
Cre05g1912 | 876 | Pfam | GTP-eEF1A C-terminal domain-like | 770 | 869 | IPR054696 | - | |
Cre05g1912 | 876 | SUPERFAMILY | Translation proteins | 667 | 762 | IPR009000 | - | |
Cre05g1912 | 876 | CDD | EF1_alpha | 449 | 668 | - | - | |
Cre05g1912 | 876 | Gene3D | Translation factors | 673 | 762 | - | - | |
Cre05g1912 | 876 | SUPERFAMILY | Ran binding protein zinc finger-like | 138 | 165 | IPR036443 | - | |
Cre05g1912 | 876 | FunFam | Elongation factor 1 alpha-like protein | 438 | 669 | - | - | |
Cre05g1912 | 876 | FunFam | elongation factor 1-alpha isoform X4 | 766 | 875 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g1912 | Cre-Chr5:31287889 | Cre06g1569 | Cre-Chr6:10875689 | 4.50E-62 | dispersed | |
Cre05g1912 | Cre-Chr5:31287889 | Cre06g1020 | Cre-Chr6:3855603 | 1.00E-10 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g1912 | K14416 | - | csv:101219939 | 1361.67 |