Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1912 ATGATCGACATCATGAGGGCGACTGTTGAGATGCAGAACACGCACATGGGTAGACTTGCATCTTGGCAGAAGGAAAAGGCGTTACCCTTTTCTTTTTTTCCGATTGTCTCCGAAGAAGGTTGGGGACTGGAAACACACGATTCCTTGTTCGTTGTATGCAATTTCGTCGGAAGAACAGGTGAAAAATGGGGAAATGCATGTGCAGCTCATGATCAGAGTTGGAAAGTGATTTTCATACATTTGGTTGCTCGCTTGAAGTTGCAAAGGCGAAAAATGCCTCGCAAGGTGAGCCATGGGTTAGATTACGATGAAGATTACGATGAGTACGACGATTACGATTATTACGATAACGATTTCGATGCAGAAGAAAAAGTAACAGAAAAAACACCTGAGACTAAGGAAGAAAGAAAGGAGCATAAGCTTTGGCGATGCCCGATTTGCACTTACGACAATGAAGACAGTTTTTCTGTCTGTGATATATGTGGGGTTCTGCGCAACCCTTTGGTCAACAACAGAAATACTCCTGATGATGGAACAGTTGAGAACATCTGCAAAGACTCTGGAGTATCCAAAATGGCCAAGTCTCTCTTTGCATCGTTGCCAAATCAGATACCCAAAAGGGCTGTAAATTTTCAAGAGCAGGACGATAAAATTGTGGAAGAAAGAGAAGAGAACATCCACAAGATTGGAAATATCCGGGGCCATTTGCATGAATTCCATAATGCTTTTAGTACCTGTAGTCATTTCCGTACTAATATAGTCCCCTTCAAGTTTGACATTCCTTCCCCAGATGATGTGGTTTCTAATGGATTGCGTTCCTCGAAAGTTGGTTTAAAAGCAGTCAGCCACAACAACTTCAACTCTTCAATATTATCTTCAGACATCACCAAGAAATCTGCAAATAATGCAGCATTGACTTCAAAAAGTGCACACAGCTCATCTACTGTATTGCCAACGAGCAAATCAGGCAGTATAGGAGATACACAGTTGAGTACCAAAAGTTCAGACAAATCAGGGATATCAATTGGTAAAAGTACAATGGTTAATGAAGAACATAATACATCAATTAGTGTAACAAAAAATTTACAACCACGTGATAACCGGTCGTCAAGCACTTCCACATCAAAGTCAGCAGGCAAATTTGGCAGCATGGATGAGAGCACCAACCCTTCTGTCGAGCGGGAAAAGCCCCAAAGTCTTGCCGGTGGTTTGAACAACATGGTTCTAAATGTCAAATCTGCCTATGCAAATTATATTAGTGGGCTAGGAAAAACATCAAATGCGCAGTATAAGCATGATAAATGGATGCTACCTGATAAAGCTGTAGACACGCTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACACTCTCAGGAAGACTGCTGCACCTATTGGGACGTGTATCCCAAAAAGAAATGCACAAATATGAAAAAGAGGCAAAGTCCCTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTTGGTGTTGCTTATTTTGATTCTAAAAGATATCATGTTGTTGTGCTCGATTCCCCAGGCCATAAAGATTTTGTTCCAAACCTGATATCTGGGGCCACACAAGCTGATGCCGCGGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAGGCTGGTATGGATGGTTCAAAGGGGCAAACAAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATTATTGTTGCAGTTAACAAAATGGATGTGGTGGAGTACTCCAAAGATCGATATGAATTTATTAAGCTGCAACTTGGAACCTTTATTCGTTCATGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGCAAATCAGAATCTAGTGACTGCCCCTTCTGATGTTCAATTTTTGTCCTGGTATCGTGGACCTAGTCTTTTGGAGGCAATTGATTCCCTTCAACCACCCACTCGAGAATTTTGTAAGCCACTGCTTATGCCGATATGTGACGTAGTTAGATCACTTTCACTGGGACAAGTGTCTGCCTGTGGCAAACTGGAAGCTGGAGCTCTCCAATCTGGATCTAAGGTTCTTATCATGCCATCTGGAGATAAAGCAACCGTCCGCACTTTAGAACGCAATTCTCAGGCTTGCAAAATAGCAAGAGCGGGGGACAATGTGACTGTTTCTCTACAAGGAGTTGAAGCAAGTAGCGTGATGGCTGGGGGCGTCCTATGCCATCCTGATTTTCCTGTTGCTGTTGCAAGACATTTGGAATTGAAGATTCTCACCTTGGAATTTGCAACACCGATATTAATAGGATCTCAGTTGGAAATTCATATACACCACGTGAAGGAGGCTGCTAGAGTTTCAAGGATAGTGTCATTACTCGATTCCAAGACGGGAAAGGTCACGAAGAAGGCACCGCGTTGTCTCAGTGCTAAACAAAGTGCAGCGATTGAGGTCGTTTTACAAAGCCCAGTTTGTGTTGAAGCATTCTCAACTAGTCGAGCTCTCGGGCGGGTATTTCTGAGAGCGATGGGTAGAACCATAGCCGTCGGCATTGTAACCCAACTAATCGGAGATCCTGAATAA 2631 42.87 MIDIMRATVEMQNTHMGRLASWQKEKALPFSFFPIVSEEGWGLETHDSLFVVCNFVGRTGEKWGNACAAHDQSWKVIFIHLVARLKLQRRKMPRKVSHGLDYDEDYDEYDDYDYYDNDFDAEEKVTEKTPETKEERKEHKLWRCPICTYDNEDSFSVCDICGVLRNPLVNNRNTPDDGTVENICKDSGVSKMAKSLFASLPNQIPKRAVNFQEQDDKIVEEREENIHKIGNIRGHLHEFHNAFSTCSHFRTNIVPFKFDIPSPDDVVSNGLRSSKVGLKAVSHNNFNSSILSSDITKKSANNAALTSKSAHSSSTVLPTSKSGSIGDTQLSTKSSDKSGISIGKSTMVNEEHNTSISVTKNLQPRDNRSSSTSTSKSAGKFGSMDESTNPSVEREKPQSLAGGLNNMVLNVKSAYANYISGLGKTSNAQYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDGSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYEFIKLQLGTFIRSCGYKDSSLSWIPLSAMANQNLVTAPSDVQFLSWYRGPSLLEAIDSLQPPTREFCKPLLMPICDVVRSLSLGQVSACGKLEAGALQSGSKVLIMPSGDKATVRTLERNSQACKIARAGDNVTVSLQGVEASSVMAGGVLCHPDFPVAVARHLELKILTLEFATPILIGSQLEIHIHHVKEAARVSRIVSLLDSKTGKVTKKAPRCLSAKQSAAIEVVLQSPVCVEAFSTSRALGRVFLRAMGRTIAVGIVTQLIGDPE 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31287889 31298258 + CrPI670011_05g019120.1 Cre05g1912 498425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1912 876 ProSitePatterns Zinc finger RanBP2-type signature. 142 161 IPR001876 -
Cre05g1912 876 Gene3D - 439 669 IPR027417 -
Cre05g1912 876 Pfam Elongation factor Tu domain 2 695 758 IPR004161 GO:0005525(InterPro)
Cre05g1912 876 CDD HBS1_C_III 763 871 - -
Cre05g1912 876 Gene3D Translation factors 766 873 - -
Cre05g1912 876 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 445 676 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre05g1912 876 MobiDBLite consensus disorder prediction 306 400 - -
Cre05g1912 876 Pfam Elongation factor Tu GTP binding domain 448 667 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre05g1912 876 PANTHER TRANSLATION FACTOR 446 869 IPR050100 GO:0003924(PANTHER)|GO:0006412(PANTHER)
Cre05g1912 876 PRINTS GTP-binding elongation factor signature 528 538 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre05g1912 876 PRINTS GTP-binding elongation factor signature 449 462 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre05g1912 876 PRINTS GTP-binding elongation factor signature 589 598 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre05g1912 876 PRINTS GTP-binding elongation factor signature 544 555 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre05g1912 876 PRINTS GTP-binding elongation factor signature 508 516 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre05g1912 876 MobiDBLite consensus disorder prediction 306 388 - -
Cre05g1912 876 FunFam Translation elongation factor EF-1 672 762 - -
Cre05g1912 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 447 684 IPR027417 -
Cre05g1912 876 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 769 872 IPR009001 -
Cre05g1912 876 Pfam GTP-eEF1A C-terminal domain-like 770 869 IPR054696 -
Cre05g1912 876 SUPERFAMILY Translation proteins 667 762 IPR009000 -
Cre05g1912 876 CDD EF1_alpha 449 668 - -
Cre05g1912 876 Gene3D Translation factors 673 762 - -
Cre05g1912 876 SUPERFAMILY Ran binding protein zinc finger-like 138 165 IPR036443 -
Cre05g1912 876 FunFam Elongation factor 1 alpha-like protein 438 669 - -
Cre05g1912 876 FunFam elongation factor 1-alpha isoform X4 766 875 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1912 Cre-Chr5:31287889 Cre06g1569 Cre-Chr6:10875689 4.50E-62 dispersed
Cre05g1912 Cre-Chr5:31287889 Cre06g1020 Cre-Chr6:3855603 1.00E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1912 K14416 - csv:101219939 1361.67