Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1927 ATGATGGAATTCTCAAACTCTGTTCCAAGTCTCTGGAGAGAAGCTCTCTCTTCTTATCCATCCAAAATCGAAGCCCTAGGCAAGCCCAATTTGGTTTCTCTCGATGATTTTTACCGAAACGAACTCCCTCTTCTTCTCCACGAGCGAAACCCTAGCCCTTACATCACTACTTCTGAGCTCTCAAAACTCATGCAATGGAAGCTCACTCGAGGAAAATGGAGGCCGCGTCTCTTGGACTTCGTTTCGTCATTGGACGAATCCCTCGTCAAATTGGCTTCTCAAAAGGCCTTTCAATGCCTTCCTGATATTTCTAAAGCCGTGTCTGAGCTTACGCCACTCAAAGGCGTTGGTCCGGCCACTGCCTCGGCAGTTCTGGCTGCTTACGCGCCGGATATTGCGCCTTTCATGTCCGACGAGGCTATGGAGGCGGCTCTAGGCAACTCCAAGGATTATTCGTTGAAGCAATACTTATCGTTCGCAAAGAAGTTGCAAGATAAAGCCAAGGAATTAAGCTCAGAAGGACAAAATTTCACACCATCTGACGTAGAGAGGGCTTTGTGGAGTATAGCTATAGGGGAAAAATTCAAAGGTTCACAATCAGAATTAGAGCCCAAGAAGGAAGGCAAAACTGGGACCAAAAGAAAGAGAAAAACATCCAAGTGA 663 46.61 MMEFSNSVPSLWREALSSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATASAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQNFTPSDVERALWSIAIGEKFKGSQSELEPKKEGKTGTKRKRKTSK 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31423240 31424670 - CrPI670011_05g019270.1 Cre05g1927 498440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1927 220 MobiDBLite consensus disorder prediction 197 220 - -
Cre05g1927 220 PANTHER UNCHARACTERIZED 1 216 - -
Cre05g1927 220 Coils Coil 153 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1927 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g603 Blo01g01483 . . . Bpe02g00468 . . Bma01g02227 . . . Cma09g00314 . . . Cpe06g00222 . . . . . . . . . . . . . . . . . . . Lsi04g01452 Csa04g02508 . . . . . . . . . . Sed11g1868 . Cmo09g00314 . . . . . . Bhi09g03188 Tan01g4657 Cmetu07g0128 . . . . Cla05g01805 Cam05g1927 Cec05g1939 Cco05g2002 Clacu05g1919 Cmu05g1801 Cre05g1927 . . Chy07g00215 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010816 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 31