Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1931 ATGGATAGGGATTGTAATACGGGGCTTCTCCTTGGCCTGGGGCGGGTTTCGGGTGATGATTCCCTGGGTTCCCTCCTACCACCCGAAGTAGCCGATGTGAAGAAGAAGCTCCAGGTTTTGAAGTTTGATGATATTTTGCCTTCTTTGACGCTTGGATTGTCGACTGTTGTAGAGAAGAGCGCCGCCACCGACGAATTAATTCAGCAGGGGTGTTCCGGTAGTCCGGCGTCGTCGTTTTCAAACTCATCGGGGTTTAAAAGAGAGCGAGACGGCGGCGGTGAAGAGAAGGAGGCGGAGGTGTATATGAAAGTGGGTGAGGAAGATGAAGATGGAAGTCCCAGGAAGAAACTTAGATTAACTAAACAACAATCCGCCATTTTAGAGGATAACTTCAAAGAACACTCAAGTCTCAGTCCTAAACAAAAGCAGGATTTGGCCAAACAGTTAAAGCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAGCAAACAGAAATGGACTGTGAATTACTGAAGAAATGTTGTGAAAAGCTGAAAGAAGAAAACACAAGGCTTCAAAAGGAACTTCAAGAGCTTAAATCACTTAAATTAACGGCTCCACCGTTCTGCATGCAGCTACAAGCCGCCACTCTCACCGTTTGCCCTTCATGTGAGACCTCAATTTGCAGCGGCGGCGGAGGAGGTGGCGGTGATGCATCTCCGCCCAATACTTTCTCAATTGGATCAAAGCCTCACTTTCTCAAATTTCCCTTTAAACACCCATCGGCGGCTTGTTAG 801 47.19 MDRDCNTGLLLGLGRVSGDDSLGSLLPPEVADVKKKLQVLKFDDILPSLTLGLSTVVEKSAATDELIQQGCSGSPASSFSNSSGFKRERDGGGEEKEAEVYMKVGEEDEDGSPRKKLRLTKQQSAILEDNFKEHSSLSPKQKQDLAKQLKLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCETSICSGGGGGGGDASPPNTFSIGSKPHFLKFPFKHPSAAC 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31485539 31486952 + CrPI670011_05g019310.1 Cre05g1931 498444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1931 266 MobiDBLite consensus disorder prediction 68 97 - -
Cre05g1931 266 SMART HOX_1 112 174 IPR001356 GO:0003677(InterPro)
Cre05g1931 266 Pfam Homeobox associated leucine zipper 170 203 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1931 266 MobiDBLite consensus disorder prediction 68 85 - -
Cre05g1931 266 SMART halz 170 213 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1931 266 Gene3D - 105 175 - -
Cre05g1931 266 Coils Coil 169 206 - -
Cre05g1931 266 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677(InterPro)
Cre05g1931 266 SUPERFAMILY Homeodomain-like 111 178 IPR009057 -
Cre05g1931 266 FunFam Homeobox-leucine zipper protein 18 99 175 - -
Cre05g1931 266 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 76 227 IPR050762 -
Cre05g1931 266 CDD homeodomain 113 171 IPR001356 GO:0003677(InterPro)
Cre05g1931 266 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre05g1931 266 Pfam Homeodomain 114 168 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1931 Cre-Chr5:31485539 Cre10g0999 Cre-Chr10:17069352 1.30E-52 dispersed
Cre05g1931 Cre-Chr5:31485539 Cre09g0360 Cre-Chr9:3557224 3.00E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53729 PF00046 Homeodomain 3.90E-17 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1931 K09338 - csv:101212868 352.443