Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1932 ATGGAGGAATATAATAATGAAGTAAACGAGAACTCAAATGGGAGAGGGAATTTCTTGTATGGATCAGGGAATTCTTCATCAGGTAATTTTGGAAGATCAACGGCTGAGATGGGTGTTGTTAATACCTTTCATCTTCAACATGGAACCGACTGTTTTCAACCGCACCACCCGATTGTCAAAACTGAAGCCACTACTTCACACCATCAGCTTCTCAAATTTCATTACCCTTTAATCAGACCACCACCACCAGCTCACCCGCCGCCGACATGTCGTCCTGATCAAAACGGTGTCGTTGATGTTGAAGCCATTAAGGCTAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCCCGGCAAGAATTTGAAGCACGGCAGCGTTCTTCCATGGTTTCTGGAGATACCACAAAGGATCCAGAGCTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTTCAAGGCCGATTCAAGAAGCCATGGATTTCATGAGAAGGATTGAATCTCAGCTCACTTCTCTGTGTAATGGCCCAGTTCGGATCTTCAATTCCGACGAGAAGTGTGAAGGTATGGGATCGTCTGAGGAGGAACAAGACAATAGCGGCGGAGAAACCGAACTCCCGGAGATAGATCCTCGTGCTGAAGATAGAGAATTGAAGAATCACCTACTGAGGAAGTACAGTGGTTACCTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAAAAAGGAAAACTCCCAAAAGATGCAAGGCAGAAACTGCTTAATTGGTGGGAGTTACATTACAAATGGCCATACCCCTCAGAGACAGAGAAGGTGGCGTTAGCTGAATCCACTGGGTTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGGCTTCATCCTCCCAATGCCGCCCTATATATTGACGGTCACTACATGACCGATGGCCATTATCGGCTCGGACCATGA 1092 46.25 MEEYNNEVNENSNGRGNFLYGSGNSSSGNFGRSTAEMGVVNTFHLQHGTDCFQPHHPIVKTEATTSHHQLLKFHYPLIRPPPPAHPPPTCRPDQNGVVDVEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGDTTKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIESQLTSLCNGPVRIFNSDEKCEGMGSSEEEQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31489712 31493620 - CrPI670011_05g019320.1 Cre05g1932 498445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1932 363 SUPERFAMILY Homeodomain-like 266 341 IPR009057 -
Cre05g1932 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 103 335 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre05g1932 363 Gene3D - 270 332 - -
Cre05g1932 363 SMART KNOX1_2 101 145 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre05g1932 363 CDD homeodomain 277 329 IPR001356 GO:0003677(InterPro)
Cre05g1932 363 Pfam ELK domain 245 266 IPR005539 GO:0003677(InterPro)
Cre05g1932 363 FunFam Homeobox protein knotted-1-like 2 270 332 - -
Cre05g1932 363 Pfam KNOX2 domain 157 202 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre05g1932 363 ProSiteProfiles ELK domain profile. 245 265 IPR005539 GO:0003677(InterPro)
Cre05g1932 363 SMART KNOX2_2 152 203 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre05g1932 363 MobiDBLite consensus disorder prediction 1 20 - -
Cre05g1932 363 Pfam Homeobox KN domain 285 324 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre05g1932 363 SMART ELK_2 161 181 IPR005539 GO:0003677(InterPro)
Cre05g1932 363 SMART ELK_2 245 266 IPR005539 GO:0003677(InterPro)
Cre05g1932 363 SMART HOX_1 267 332 IPR001356 GO:0003677(InterPro)
Cre05g1932 363 Pfam KNOX1 domain 102 144 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre05g1932 363 ProSitePatterns 'Homeobox' domain signature. 303 326 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre05g1932 363 ProSiteProfiles 'Homeobox' domain profile. 265 328 IPR001356 GO:0003677(InterPro)
Cre05g1932 363 MobiDBLite consensus disorder prediction 212 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0555 Cre-Chr2:2630237 Cre05g1932 Cre-Chr5:31489712 1.60E-71 dispersed
Cre02g1810 Cre-Chr2:31433610 Cre05g1932 Cre-Chr5:31489712 6.70E-64 dispersed
Cre04g1788 Cre-Chr4:35812840 Cre05g1932 Cre-Chr5:31489712 8.60E-78 dispersed
Cre05g1822 Cre-Chr5:30367275 Cre05g1932 Cre-Chr5:31489712 5.40E-29 dispersed
Cre05g1932 Cre-Chr5:31489712 Cre05g2714 Cre-Chr5:38032045 2.00E-72 dispersed
Cre05g1932 Cre-Chr5:31489712 Cre08g1625 Cre-Chr8:28747085 6.30E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53730 PF03791 KNOX2 3.20E-25 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1932 - - - 0.0