Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1935 ATGATGATCGGAGAACAATCTAGATTCAATCACACCATTCAAGTTCCTCCTTGGGACCCACTTGAAGACCACCATATGACCGGAATTTCCTCGCCGGTCTTCATCGCCGGTGGGGTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCATTACCTTCCCTCTGCAGCGGATTCCGACGATTTGGACGCGGTGGCTGAAGCGGTGGATGGTTTTTCCTGTGACCATTTTCGGATGTTCGAGTTCAAAATCCGGAGATGCGCACGTGGGAGGTCGCACGATTGGACGGAGTGTCCGTACGCACATCCCGGCGAGAAAGCTCGCCGCCGAGATCCGAGGAAGCATCATTACTCCGGTACGGCTTGTCCGGAGTTTCGAAAAGGGAATTGCAAGAAAGGAGATTCTTGCGATCTCGCTCACGGGATTTTTGAGTGTTGGCTTCATCCAGCTCGGTACCGGACTCAGCCATGTAAGGATGGATTAGCCTGTCGCCGTCGTGTCTGTTTTTTCGCTCACACGCCGGAACAGCTTCGGGTCGTGCCGCAGCAGAGCCCGAGAACGCCTGTTTCGGCCGATTCCGTTGATGGTTCTTCACGAATTGCACACGCACTCGATTCCTATTTTGCTAAAGGGTCCTTTGTGACCTCACCCACTTCAATTCTATCAACGCCGCCTGTCTCTCCTCCGTCCGATTCACCACCCCTGTCGCCGAATTGTCCGTTTAATTCGATGAATGGACTGGTTTCATGTATGCGTAATCTTCAGATTGGGAAATTGAAAGCAACCCCTCATTGGGGGAGGATTCAATTGGGGCACAATCCGCTCTCTCCCTCCGGCTCTGGTTTCTTTAACTTACCGTCAACTCCGACCATCGGAAATTACGAATTATGGGGGAAGAATTACGAGGAAGAACCGGTAATGGAGAGAGTGGAATCTGGGAGAGACCTTAGAGCCAAAATGTATGCGAAACTCAGCAAAGACAACTCTGTTAAGGAAGTGGATTCGACATTGACACCCGATGTCGGATGGGTGTCGGAGCTATTAATGTGA 1050 51.33 MMIGEQSRFNHTIQVPPWDPLEDHHMTGISSPVFIAGGVDSFIDSFSAIHHYLPSAADSDDLDAVAEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKHHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVVPQQSPRTPVSADSVDGSSRIAHALDSYFAKGSFVTSPTSILSTPPVSPPSDSPPLSPNCPFNSMNGLVSCMRNLQIGKLKATPHWGRIQLGHNPLSPSGSGFFNLPSTPTIGNYELWGKNYEEEPVMERVESGRDLRAKMYAKLSKDNSVKEVDSTLTPDVGWVSELLM 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31535587 31536636 + CrPI670011_05g019350.1 Cre05g1935 498448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1935 349 Gene3D - 111 185 - -
Cre05g1935 349 PANTHER UNKEMPT FAMILY MEMBER 42 348 IPR045234 -
Cre05g1935 349 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872(InterPro)
Cre05g1935 349 SMART c3hfinal6 116 142 IPR000571 GO:0046872(InterPro)
Cre05g1935 349 SMART c3hfinal6 151 174 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1859 Cre-Chr3:35516935 Cre05g1935 Cre-Chr5:31535587 2.80E-93 dispersed
Cre05g1935 Cre-Chr5:31535587 Cre11g0685 Cre-Chr11:3909882 4.70E-87 dispersed
Cre07g0609 Cre-Chr7:3900216 Cre05g1935 Cre-Chr5:31535587 1.20E-57 transposed
Cre05g1935 Cre-Chr5:31535587 Cre08g1626 Cre-Chr8:28770826 1.50E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53731 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1935 - - - 0.0