Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1940 ATGGGAATCTGTATATCGTCTGCATCTTCTCAGATTCGCCATGAAACTAACAAAGTTGGGAGTGTTTTAGAAGAAGATTATTGTAAAAAGTCATATTGTGTGTGTGGGATTCAGAAACTGGAATCCATTTGTTCCAAGCAAGGGAGGAAAGGAGTCAACCAAGATGCTGCCTTTTCCTATCAAGAGTATGGAGAAGCAGAGGAGAGTTGTTTGTTTGGAGTTTTTGATGGGCATGGACAAAATGGTCATATTGTGAGCAACATAGTGAAGAATAGATTACCTTCACTGTTGCTTGGGCAGATAACTGGGGAGACAAAGAGTTTTGAATTGTGGAAACAAGCTTTTGAAACTTCCTTCAAGGCCATGGATAAGGATATCAAAGTTGAAGAGAATTTGGATTGCTCCTATAGCGGATCCACCGCAGTTGTGGTGGTCAAGCAGGGAGATTATTTGGTAATTGGGAATTTGGGGGATTCGAGGGCGGTGATGGGGAGGATCACGGATGATGGAGGAATCAAAGCCATTCAATTAACCACTGATTTGAAGCCTGGATTACCGAGTGAGGGTGAGCGAATAAGGAGGTGCAAAGGGAGGGTGTTGGCGCTGAAAGAAGAGGCGCATATACCCAGAGTGTGGCTGCCCAATGAAGACGCCCCGGGGCTGGCTATGTCCAGAGCTTTTGGAGATTTTGCTCTTAAACACTATGGCATTATTGCTCTCCCCCTTGTCTCCTTCCGCCCTCTTACTTCTCACGACCGTTTTATTATTCTCGCCACTGATGGGATATGGGACGTGCTGAGCAACAATGAAGTAGCGTCCATCGTGTGGGCGGCGGAGAGCGAAGAAGCGGCGGCGAAAGCGGTGGTGGAGGCGGCGGCCGAGGCTTGGAAACGCTACCCTTCTTCAAAACACGACGACTGCACCGTCTTAGAACCGGCGTTCTCCGTCGTCGGTCAGGCCATGTCCGGGACCGGGAAAGAAGTAATTCAAGGCTGCAGGCTTTTCTAG 1008 48.31 MGICISSASSQIRHETNKVGSVLEEDYCKKSYCVCGIQKLESICSKQGRKGVNQDAAFSYQEYGEAEESCLFGVFDGHGQNGHIVSNIVKNRLPSLLLGQITGETKSFELWKQAFETSFKAMDKDIKVEENLDCSYSGSTAVVVVKQGDYLVIGNLGDSRAVMGRITDDGGIKAIQLTTDLKPGLPSEGERIRRCKGRVLALKEEAHIPRVWLPNEDAPGLAMSRAFGDFALKHYGIIALPLVSFRPLTSHDRFIILATDGIWDVLSNNEVASIVWAAESEEAAAKAVVEAAAEAWKRYPSSKHDDCTVLEPAFSVVGQAMSGTGKEVIQGCRLF 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31583701 31585700 - CrPI670011_05g019400.1 Cre05g1940 498453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1940 335 SMART PP2C_4 24 317 IPR001932 -
Cre05g1940 335 CDD PP2Cc 42 276 IPR001932 -
Cre05g1940 335 Gene3D - 39 314 IPR036457 -
Cre05g1940 335 Pfam Protein phosphatase 2C 44 293 IPR001932 -
Cre05g1940 335 PANTHER PROTEIN PHOSPHATASE 42 309 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre05g1940 335 ProSiteProfiles PPM-type phosphatase domain profile. 40 314 IPR001932 -
Cre05g1940 335 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169(InterPro)
Cre05g1940 335 SUPERFAMILY PP2C-like 41 310 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1940 Cre-Chr5:31583701 Cre10g0602 Cre-Chr10:5556265 1.10E-72 dispersed
Cre05g1940 Cre-Chr5:31583701 Cre02g2054 Cre-Chr2:34011208 1.30E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1940 - - - 0.0