Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1949 ATGTCGAAAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGCGGAATTAATGAACACCAGCGATTGAGCGATGCCCGACCTGTTACACGACCCAGTTCGAGCCCCAGTCCAGGCCCAAGCCCCAATAGTAATCCATCTGGTTCGTCGTCTTCTGGGTCTTCCTCGTCTTTGTCTATGGCGTCTTCCACTACAATGGGGAGATTGGAGGCTGTTGAATCCGTCGTTGATCCGGCGGCTCCTGGGGATGTCGTGGGCGGTGGGTGCGTGGATTTCAATGCCTTGGAAGAGGAGTTTCAGGTGCAATTGGCTATGGCGATTAGTGCTTCCGATCCTGATTCCAGACAAGACACTGAATCCGCTCAGATCGATGCTGCTAAGCGGATGAGTCTTGGCTGTTCGCCTACAGTCTCCGGCAGTAAAGCCCTCGCTGAATTTCTCTCCCTTCAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACTTATATGGCATTACTGCAAACTCTAGCACTCGAGGAAAGATGCCACTGTTAGTTGATCTTAAAGAAATATGTGTGACAAGTGATATTGATTATGAAGTGATTTTGGTTAACCGCTTGCTTGATCCTGAGCTTCAACAGTTGGAGAGACAAGCATATAACATATTCATGGAATGTAGAGTTTCTGAATATGGCTTCATTTTAAGTGGTCTGGTTCAAAAAATTGCTGATATCGTTGTTGCTAGAATGGGTGGTCCTGTTGGTGATGCTGAAGAAATGTTGAGAAGGTGGACCCGCAGGAGTTATGAGATGCGTAGTTCCCTGAACACTATTATTCTACCACTTGGACGTCTAGATATTGGACTTGCACGTCATAGAGCCTTGCTTTTTAAGGTACTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACTGATGACGGAGCTGTGAACATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCGGGCACGCTAATTCCCTCAGAGGCACCCAGCTGTCAATTTTCAAATTATGGCTTTGATAGGAGGCCCGCAGATGTTATAGAAGTTCCTGAAGATACGCCAGTATTACAAAATGAAGAAGCTGAATCAGTATCAATTTCATCTACTCAAGATGGAGTAGCAAATGTTTGCAACTTAATATCCAAAGAAGCTTCAGATTTAGATGCTCAATCAAAAGAAAATGTTAGGAACTTTATTGAAGAAATTCAAACTGGGAGTCCTGATTATGATTTTACGAAGCTTCTAGAATCAGAAAACAGTGTGTATGATAGTTCATTGGGTGCATGTGCACAGTCCGCATCTGCACAGAAGAAGAAAGTGAAAAAAGTGTCAAAGTATGTCATAAGTGCTGCAAAAAACCCAGAGTTTGCTCAGAAATTACATGCTGTCTTGTTAGAGAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGACTCACAGGATAATGGTGAAAGCAAAGCGACTTTTCAAATGTATCCAATCAACGGAAAGGGCATTGATGTTGGTCTTCAGAGCCACCCCTATAGTTTAGCAAACCACGGACAGTCTTCTGCTACTTCTACCGAAACAGAGTATTTAAACAATGCTGTCCGTGAAAATAAGCAGAAAGTGTCTGCCGAGGGATCATCTGAAGAACAAATGCCTGATATAAATGCAAACAAGCACAGTATTTTTTGGCCTCACAGTATGAAAAACGAGGGCTTTGTGTTTGTCGATGCTAATGGGGAAACAGGAAAATTGGTCGATGTTAATGGAACTTTTCATCGTGAACATGTGGATGGTGTTTCATTGACATCTGATGCCGACTCTCATAAAAGACTAGGAACTGCCTTAGTGAGTGAAGAAAGAAGATTGTTACAAGATACGAGTGGTGGAAATCTTCAGTGCTTTGATTTGCGTGAAAATCCACATGAAATTTTGTTAGAAATTGATAATAGTAAACTGCATGCTAGTGATGACCACAGTGAGACAATTAACCCAATATTAGGTGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTCCACATTGGTGAACGTATTGGTATTGGGTCATATGGTGAGGTTTATCGAGCAGACTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCTTGGATCAAGATTTTTCCGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGGCTGAGGCATCCTAATGTTGTTCTTTTTATGGGAGCGGTCACTCGCCCTCCTCATTTCTCTATCCTTACCGAGTTTCTTCCCAGGGGAAGTTTGTATAGGTTACTGCATCGTCCCAACTCTCAACTAGATGAAAGGAGACGATTGAAAATGGCTCTTGATGTGGCCAAAGGAATGAACTACTTGCACACAAGTCATCCGACCATAGTTCATAGAGATCTGAAGTCTCCCAATCTCCTTGTTGATAAAAACTGGGTTGTCAAGGTTTGTGATTTTGGTTTGTCACGTGTCAAGCAGAATACATTTCTGTCTTCGAAGTCAACTGCTGGAACGCCTGAATGGATGGCACCAGAAGTTCTAAGGAACGAACCAGCCAATGAAAAGTGTGATGTGTATAGTTTTGGTGTGATATTGTGGGAGTTAACGACTTGCCGGATACCATGGAAAGGTTTGAATCCAATGCAGGTTGTAGGAGCTGTTGGATTCCAGAATAGGCGCCTGGAGATTCCAGAAGATGTTGATCCAGCAGTTGCACAGATCATTTGCGATTGTTGGCAAACGGACTCGCAATTGAGGCCGTCATTCTCTCAGCTTATTACTCGATTGCGGCGCCTTCAACGGCTTGTTCGGAAAACATGCTCCGTGAATCAAATATCGGAGTGA 2913 42.67 MSKMKHLLRKLHIGGGINEHQRLSDARPVTRPSSSPSPGPSPNSNPSGSSSSGSSSSLSMASSTTMGRLEAVESVVDPAAPGDVVGGGCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPTVSGSKALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITANSSTRGKMPLLVDLKEICVTSDIDYEVILVNRLLDPELQQLERQAYNIFMECRVSEYGFILSGLVQKIADIVVARMGGPVGDAEEMLRRWTRRSYEMRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYGFDRRPADVIEVPEDTPVLQNEEAESVSISSTQDGVANVCNLISKEASDLDAQSKENVRNFIEEIQTGSPDYDFTKLLESENSVYDSSLGACAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQDNGESKATFQMYPINGKGIDVGLQSHPYSLANHGQSSATSTETEYLNNAVRENKQKVSAEGSSEEQMPDINANKHSIFWPHSMKNEGFVFVDANGETGKLVDVNGTFHREHVDGVSLTSDADSHKRLGTALVSEERRLLQDTSGGNLQCFDLRENPHEILLEIDNSKLHASDDHSETINPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICDCWQTDSQLRPSFSQLITRLRRLQRLVRKTCSVNQISE 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31636477 31645189 - CrPI670011_05g019490.1 Cre05g1949 498462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1949 970 SMART serkin_6 700 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1949 970 Gene3D Phosphorylase Kinase; domain 1 693 777 - -
Cre05g1949 970 MobiDBLite consensus disorder prediction 13 64 - -
Cre05g1949 970 CDD STKc_MAP3K-like 706 949 - -
Cre05g1949 970 PANTHER SERINE-THREONINE PROTEIN KINASE 38 955 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cre05g1949 970 FunFam Serine/threonine-protein kinase isoform 1 691 778 - -
Cre05g1949 970 Gene3D Transferase(Phosphotransferase) domain 1 779 965 - -
Cre05g1949 970 PRINTS Tyrosine kinase catalytic domain signature 813 831 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1949 970 PRINTS Tyrosine kinase catalytic domain signature 774 787 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1949 970 PRINTS Tyrosine kinase catalytic domain signature 879 901 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1949 970 PRINTS Tyrosine kinase catalytic domain signature 923 945 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1949 970 PRINTS Tyrosine kinase catalytic domain signature 860 870 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1949 970 FunFam Serine/threonine-protein kinase CTR1 779 962 - -
Cre05g1949 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1949 970 Pfam Protein tyrosine and serine/threonine kinase 700 952 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1949 970 MobiDBLite consensus disorder prediction 44 64 - -
Cre05g1949 970 ProSitePatterns Protein kinases ATP-binding region signature. 706 728 IPR017441 GO:0005524(InterPro)
Cre05g1949 970 SUPERFAMILY Protein kinase-like (PK-like) 680 950 IPR011009 -
Cre05g1949 970 ProSiteProfiles Protein kinase domain profile. 700 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1949 970 Pfam Ethylene-responsive protein kinase Le-CTR1 144 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1406 Cre-Chr1:27318131 Cre05g1949 Cre-Chr5:31636477 1.70E-190 dispersed
Cre02g2094 Cre-Chr2:34420950 Cre05g1949 Cre-Chr5:31636477 7.90E-73 dispersed
Cre03g1896 Cre-Chr3:35979254 Cre05g1949 Cre-Chr5:31636477 8.20E-188 dispersed
Cre04g1072 Cre-Chr4:29424234 Cre05g1949 Cre-Chr5:31636477 1.70E-117 dispersed
Cre05g1949 Cre-Chr5:31636477 Cre11g1883 Cre-Chr11:30496870 4.30E-114 dispersed
Cre10g0688 Cre-Chr10:6547289 Cre05g1949 Cre-Chr5:31636477 4.10E-23 dispersed
Cre05g1949 Cre-Chr5:31636477 Cre10g2049 Cre-Chr10:35190531 2.70E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64161 PF07714 PK_Tyr_Ser-Thr 3.80E-65 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1949 K04424 - csv:101214554 1714.89