Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g1957 | ATGATGATGATGATGATGAAAGGAAATTTAATGGTGGATGAGAATTTGTCAGTTTTGACTTGTGCTTCTGGAGAAATAACAACAAGAAATGAAATTACCCCTACTGGCCCTATCTATTCTCATCAATCCTCTGCTTCCACAAATCAACCGCTACCACCACCGCCACTACCACTACCACTACCCCCGCCACCGTCGAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGAAGCGGAAGTGATTGCCTTATCACCAAAATCACTTCTAGCAACGAATAGATTTATATGTGAGATTTGTAAGAAGGGGTTTCAAAGAGATCAGAATCTACAGCTCCACAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAAGCGACATGCGTGCATCATCACCCGTCGAGAGCTCTCGGTGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAATGTTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGCGGAACCCTCTTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAATAACAATAATAACCCAACTCCAAAAACATCCCTTTTCCCATCTATTTCCCCTCATAATTTTCCTCTTAAAATCGAACATCAAGACCCTTTTTTTCCTTCCTTAAATCCTCAAAACCCTAACAACCCTACTTCTATCGGGTTCGGTTTACCGGGTCCGGGTCCGGGTCAACTTTTTGCTTCTTGTCCTGCATGGGAAATGAATGATAATAATAATAATAATAATAATAATTCATGTCCAGCTGAAATTGCTCCATTTTTACATCACGTGATGGGTTTTGAAGAGGCGTCCTTTGAAGAAGCTCTCAATGGGATATTGATGAATAATAATAATAGAGCTCATAAAGACGGTGGCAAAGGTGGCGCCGCCGCAGCCGGAGACATAACGAGGGATTTTCTTGGGCTGAGACCGGTGGCGGGTACACAGCCGGATCATCCTATGTTTCAGAATCATGAGATGATAAACAACGACATGTCGAATTTGGATTCTTCTTCTTCGACAACATTTGGATTGCACCAGAACCAGAACCAGAACACGACATGTTGGCGTTCATAA | 1245 | 43.21 | MMMMMMKGNLMVDENLSVLTCASGEITTRNEITPTGPIYSHQSSASTNQPLPPPPLPLPLPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEATCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNNNNNNPTPKTSLFPSISPHNFPLKIEHQDPFFPSLNPQNPNNPTSIGFGLPGPGPGQLFASCPAWEMNDNNNNNNNNSCPAEIAPFLHHVMGFEEASFEEALNGILMNNNNRAHKDGGKGGAAAAGDITRDFLGLRPVAGTQPDHPMFQNHEMINNDMSNLDSSSSTTFGLHQNQNQNTTCWRS | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31710814 | 31712729 | - | CrPI670011_05g019570.1 | Cre05g1957 | 498470 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g1957 | 414 | MobiDBLite | consensus disorder prediction | 48 | 70 | - | - | |
Cre05g1957 | 414 | Gene3D | Classic Zinc Finger | 164 | 233 | - | - | |
Cre05g1957 | 414 | Gene3D | Classic Zinc Finger | 91 | 118 | - | - | |
Cre05g1957 | 414 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 95 | 117 | IPR013087 | - | |
Cre05g1957 | 414 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 149 | 228 | - | - | |
Cre05g1957 | 414 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 170 | 194 | - | - | |
Cre05g1957 | 414 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 132 | 166 | - | - | |
Cre05g1957 | 414 | SUPERFAMILY | beta-beta-alpha zinc fingers | 94 | 191 | IPR036236 | - | |
Cre05g1957 | 414 | SMART | c2h2final6 | 171 | 191 | IPR013087 | - | |
Cre05g1957 | 414 | SMART | c2h2final6 | 95 | 117 | IPR013087 | - | |
Cre05g1957 | 414 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 197 | 236 | - | - | |
Cre05g1957 | 414 | MobiDBLite | consensus disorder prediction | 30 | 79 | - | - | |
Cre05g1957 | 414 | MobiDBLite | consensus disorder prediction | 30 | 47 | - | - | |
Cre05g1957 | 414 | MobiDBLite | consensus disorder prediction | 386 | 414 | - | - | |
Cre05g1957 | 414 | FunFam | protein indeterminate-domain 12-like | 74 | 142 | - | - | |
Cre05g1957 | 414 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 48 | 374 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cre05g1957 | 414 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 97 | 117 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g1957 | Cre-Chr5:31710814 | Cre09g0697 | Cre-Chr9:6684159 | 1.20E-84 | dispersed | |
Cre05g1957 | Cre-Chr5:31710814 | Cre09g0064 | Cre-Chr9:901632 | 2.90E-88 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53733 | None | None | None | None | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g1957 | K25870 | - | csv:101215280 | 616.69 |