Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1957 ATGATGATGATGATGATGAAAGGAAATTTAATGGTGGATGAGAATTTGTCAGTTTTGACTTGTGCTTCTGGAGAAATAACAACAAGAAATGAAATTACCCCTACTGGCCCTATCTATTCTCATCAATCCTCTGCTTCCACAAATCAACCGCTACCACCACCGCCACTACCACTACCACTACCCCCGCCACCGTCGAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGAAGCGGAAGTGATTGCCTTATCACCAAAATCACTTCTAGCAACGAATAGATTTATATGTGAGATTTGTAAGAAGGGGTTTCAAAGAGATCAGAATCTACAGCTCCACAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAAGCGACATGCGTGCATCATCACCCGTCGAGAGCTCTCGGTGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAATGTTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGCGGAACCCTCTTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAATAACAATAATAACCCAACTCCAAAAACATCCCTTTTCCCATCTATTTCCCCTCATAATTTTCCTCTTAAAATCGAACATCAAGACCCTTTTTTTCCTTCCTTAAATCCTCAAAACCCTAACAACCCTACTTCTATCGGGTTCGGTTTACCGGGTCCGGGTCCGGGTCAACTTTTTGCTTCTTGTCCTGCATGGGAAATGAATGATAATAATAATAATAATAATAATAATTCATGTCCAGCTGAAATTGCTCCATTTTTACATCACGTGATGGGTTTTGAAGAGGCGTCCTTTGAAGAAGCTCTCAATGGGATATTGATGAATAATAATAATAGAGCTCATAAAGACGGTGGCAAAGGTGGCGCCGCCGCAGCCGGAGACATAACGAGGGATTTTCTTGGGCTGAGACCGGTGGCGGGTACACAGCCGGATCATCCTATGTTTCAGAATCATGAGATGATAAACAACGACATGTCGAATTTGGATTCTTCTTCTTCGACAACATTTGGATTGCACCAGAACCAGAACCAGAACACGACATGTTGGCGTTCATAA 1245 43.21 MMMMMMKGNLMVDENLSVLTCASGEITTRNEITPTGPIYSHQSSASTNQPLPPPPLPLPLPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEATCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNNNNNNPTPKTSLFPSISPHNFPLKIEHQDPFFPSLNPQNPNNPTSIGFGLPGPGPGQLFASCPAWEMNDNNNNNNNNSCPAEIAPFLHHVMGFEEASFEEALNGILMNNNNRAHKDGGKGGAAAAGDITRDFLGLRPVAGTQPDHPMFQNHEMINNDMSNLDSSSSTTFGLHQNQNQNTTCWRS 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31710814 31712729 - CrPI670011_05g019570.1 Cre05g1957 498470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1957 414 MobiDBLite consensus disorder prediction 48 70 - -
Cre05g1957 414 Gene3D Classic Zinc Finger 164 233 - -
Cre05g1957 414 Gene3D Classic Zinc Finger 91 118 - -
Cre05g1957 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Cre05g1957 414 FunFam protein indeterminate-domain 5, chloroplastic-like 149 228 - -
Cre05g1957 414 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 170 194 - -
Cre05g1957 414 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 132 166 - -
Cre05g1957 414 SUPERFAMILY beta-beta-alpha zinc fingers 94 191 IPR036236 -
Cre05g1957 414 SMART c2h2final6 171 191 IPR013087 -
Cre05g1957 414 SMART c2h2final6 95 117 IPR013087 -
Cre05g1957 414 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 197 236 - -
Cre05g1957 414 MobiDBLite consensus disorder prediction 30 79 - -
Cre05g1957 414 MobiDBLite consensus disorder prediction 30 47 - -
Cre05g1957 414 MobiDBLite consensus disorder prediction 386 414 - -
Cre05g1957 414 FunFam protein indeterminate-domain 12-like 74 142 - -
Cre05g1957 414 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 48 374 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre05g1957 414 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1957 Cre-Chr5:31710814 Cre09g0697 Cre-Chr9:6684159 1.20E-84 dispersed
Cre05g1957 Cre-Chr5:31710814 Cre09g0064 Cre-Chr9:901632 2.90E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53733 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1957 K25870 - csv:101215280 616.69