Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1963 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGAGAAGGAAGACAATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAGGCTATGGAGGAGCTCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACACAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCCGATTCTTTTACTGCCGCTGTCGCCACTGTCCTCCGTGCTCCGCCGAAGAATTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATTAGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGATGCATGCAGGCTCTGGTTCGAGTTCAAGCTCGAGTCAGGGCACGTCGTGTGAGAATGTCGGTCGAGGGGCAGGCCGTGCAGCAATTGCTTAATGAACATCGCAGCAAAGCTGATCTCTTGAAGCAAGCTGAGGAAGGATGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAGAAGCAATTGAAGGCAACGCCAAACTCAACTTCGCGAACAAATGCTTCGATTTACACTCTTAAGAATTACGAGTTTGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGAATCATTTGAGGTCACTCCGCCTTCAAAGAGCTGTGTAGAGTCTGTTGTGTCTAAACATTCCAAAAGTTCTGAACCAAGCTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCCTCAAGTGGGCAAACTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCCACAACTCCCGTGTCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCTAGTTACATGAACCTTACAGAGTCGACAAAAGCGAAGCAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAACGGGGATTCTAAGAGCAGTGCCGGATCTGATTCATCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACAGGATTGGATAAGAATGGAACAAAGCTAAGGTCATGA 1338 46.94 MGGSGKWMKVFIGQRKSEKEDNEKLGSTKTKKWRLWRSSSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPKNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYTLKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTESFEVTPPSKSCVESVVSKHSKSSEPSLVKVRKNNVSTRISAKPPSSGQTRSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTGLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31752736 31754544 - CrPI670011_05g019630.1 Cre05g1963 498476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1963 445 MobiDBLite consensus disorder prediction 307 326 - -
Cre05g1963 445 MobiDBLite consensus disorder prediction 12 30 - -
Cre05g1963 445 ProSiteProfiles IQ motif profile. 90 118 - -
Cre05g1963 445 FunFam IQ-domain 11 89 140 - -
Cre05g1963 445 ProSiteProfiles IQ motif profile. 114 141 - -
Cre05g1963 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515(InterPro)
Cre05g1963 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515(InterPro)
Cre05g1963 445 SMART iq_5 112 133 IPR000048 GO:0005515(InterPro)
Cre05g1963 445 SMART iq_5 89 111 IPR000048 GO:0005515(InterPro)
Cre05g1963 445 PANTHER IQ-DOMAIN 5-RELATED 6 398 - -
Cre05g1963 445 MobiDBLite consensus disorder prediction 410 424 - -
Cre05g1963 445 MobiDBLite consensus disorder prediction 1 30 - -
Cre05g1963 445 MobiDBLite consensus disorder prediction 410 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1085 Cre-Chr5:10192797 Cre05g1963 Cre-Chr5:31752736 8.50E-18 dispersed
Cre05g1963 Cre-Chr5:31752736 Cre05g2265 Cre-Chr5:34209890 5.90E-26 dispersed
Cre03g1557 Cre-Chr3:30944266 Cre05g1963 Cre-Chr5:31752736 6.80E-41 transposed
Cre05g1963 Cre-Chr5:31752736 Cre09g0068 Cre-Chr9:935121 2.80E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1963 - - - 0.0