Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1963 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGAGAAGGAAGACAATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAGGCTATGGAGGAGCTCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACACAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCCGATTCTTTTACTGCCGCTGTCGCCACTGTCCTCCGTGCTCCGCCGAAGAATTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATTAGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGATGCATGCAGGCTCTGGTTCGAGTTCAAGCTCGAGTCAGGGCACGTCGTGTGAGAATGTCGGTCGAGGGGCAGGCCGTGCAGCAATTGCTTAATGAACATCGCAGCAAAGCTGATCTCTTGAAGCAAGCTGAGGAAGGATGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAGAAGCAATTGAAGGCAACGCCAAACTCAACTTCGCGAACAAATGCTTCGATTTACACTCTTAAGAATTACGAGTTTGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGAATCATTTGAGGTCACTCCGCCTTCAAAGAGCTGTGTAGAGTCTGTTGTGTCTAAACATTCCAAAAGTTCTGAACCAAGCTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCCTCAAGTGGGCAAACTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCCACAACTCCCGTGTCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCTAGTTACATGAACCTTACAGAGTCGACAAAAGCGAAGCAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAACGGGGATTCTAAGAGCAGTGCCGGATCTGATTCATCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACAGGATTGGATAAGAATGGAACAAAGCTAAGGTCATGA 1338 46.94 MGGSGKWMKVFIGQRKSEKEDNEKLGSTKTKKWRLWRSSSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPKNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYTLKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTESFEVTPPSKSCVESVVSKHSKSSEPSLVKVRKNNVSTRISAKPPSSGQTRSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTGLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31752736 31754544 - CrPI670011_05g019630.1 Cre05g1963 498476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1963 445 MobiDBLite consensus disorder prediction 307 326 - -
Cre05g1963 445 MobiDBLite consensus disorder prediction 12 30 - -
Cre05g1963 445 ProSiteProfiles IQ motif profile. 90 118 - -
Cre05g1963 445 FunFam IQ-domain 11 89 140 - -
Cre05g1963 445 ProSiteProfiles IQ motif profile. 114 141 - -
Cre05g1963 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515(InterPro)
Cre05g1963 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515(InterPro)
Cre05g1963 445 SMART iq_5 112 133 IPR000048 GO:0005515(InterPro)
Cre05g1963 445 SMART iq_5 89 111 IPR000048 GO:0005515(InterPro)
Cre05g1963 445 PANTHER IQ-DOMAIN 5-RELATED 6 398 - -
Cre05g1963 445 MobiDBLite consensus disorder prediction 410 424 - -
Cre05g1963 445 MobiDBLite consensus disorder prediction 1 30 - -
Cre05g1963 445 MobiDBLite consensus disorder prediction 410 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1963 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1085 Cre-Chr5:10192797 Cre05g1963 Cre-Chr5:31752736 8.50E-18 dispersed
Cre05g1963 Cre-Chr5:31752736 Cre05g2265 Cre-Chr5:34209890 5.90E-26 dispersed
Cre03g1557 Cre-Chr3:30944266 Cre05g1963 Cre-Chr5:31752736 6.80E-41 transposed
Cre05g1963 Cre-Chr5:31752736 Cre09g0068 Cre-Chr9:935121 2.80E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre01g0429 . 1 479 IQD Protein Family AT3G52290 54.2 2.6e-103 372.9
Cre05g2265 . 1802 2011 IQD Protein Family AT2G26410 50.7 4.8e-43 172.9
Cre03g1557 . 36 443 IQD Protein Family AT3G22190 57.8 7.9e-97 351.3
Cre05g1963 . 1 438 IQD Protein Family AT2G26180 61.6 3.8e-120 428.7
Cre04g1962 . 25 298 IQD Protein Family AT2G33990 52.1 6.1e-63 238.0
Cre07g1360 . 89 267 IQD Protein Family AT2G33990 53.3 4.0e-46 182.2
Cre04g1962 . 25 246 IQD Protein Family AT3G15050 50.5 4.6e-55 211.8
Cre07g1360 . 88 279 IQD Protein Family AT3G15050 58.2 2.5e-53 206.1
Cre09g1774 . 111 463 IQD Protein Family AT5G13460 50.1 2.6e-74 276.6
Cre06g1039 . 29 537 IQD Protein Family AT4G00820 51.3 4.0e-114 409.1
Cre03g1876 . 1 391 IQD Protein Family AT3G16490 50.5 2.5e-65 246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39