Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1969 ATGAGCAATTGGTACGGGCAAGGAGGAAATCATAGATTGAACCACAATGTCGCAATTCATGAAGATAAGGCTTACAATGGAAGTCCTTCTGTTTCGTCTGTAATGGAAGAGTGGATGATCTGCCAGCTCTTGCAGAAATTTGTCAAAGTTGTTGCGAACCCCCAATTCCGCAGTGGCATGAGAGACAGCAGCCCTAAGGGTTTTAGTAAAGGACCTCCTGCAAGGAACGATGCTCCTTCTCATGCCCGTTTGCCAATATCCATAAAACTCGCCTTCTGCTATCTTCCACTCCGAAGTTTAGGATTGAGTTTCCGATTTGTTTACGTATTAGAGCCGCCGACGAGGGGGAAGGTCGTGTTGAATACCACCTGTGGACCGCTCGATATCGAGCTCTGGCCTAAGGAGGCTCCCAAAGCCGTCAGAAATTTCGTTCAGCTCTGCCTTGAAGGCTACTACGACAACACCATCTTTCACCGGATCATCAAGGACTTCATTGTTCAGGGCGGCGATCCTACCGGTAGCGGCACAGGTGGTGAAAGCATATATGGGGGTGTTTTCCCGGATGAGTTTCACTCACGGCTTAGATTCAAGCATAGGGGCTTAGTAGCTTGTGCAAATGCTGGGTCGCCTCATTCTAATGGAAGTCAGTTTTTTATAACCTTGAGTCGATGTGATGACCTTGACAAGAAGCACACAATTTTTGGAAAGGTCACTGGGGATTCTATATATAACCTAACAAGTTTGGGTGAGTTCGAAACTGACAAGGATAATCGTCCTGTGGATCCACCCAAGATAAAATCAATTGAGGTATTATGGAATCCATTTGACGACATTGTTCCAAGAGCATCTGCTAAGCCTGTGCCTGCATCCACCCTTGATTCTGAAAACAAGGACACCAAGAAGAAAGCTGTGAAAAAACTGAATTTACTATCGTTTGGAGAAGAAGCTGAAGAGGATGAGAAAGAATTGGCAGCTGTGAAGAAAAAAATTAAGAGCAGTCATGATGTTTTGGATGATCCACGTCTGCTAAAGGCAGAGATTCCAAGCAGTGAATTGAACTCGTCTGACAGTAAAAGAACGAGGGAGATGCAGCTATCTGTTAGAGAAACTTTAGCATCAAAGAAACAAGAGTCTCGCAGAGATTCAGATGCTGAAAATTCTAATCTCCCTCAATATAGTGATAGTGATGATGATGAAGCTAACTTCGATGCCCGAATGCGTCAACAGATATTGAGAAAAAGAACAGAGTTGGGAGATGCACCATCCCACAAGTCTAAAAATGGGACTTCTGACTCAAAGAATAATGAAGGATCCACTCGAAGGCCCAGTGCTGAGAACACTAAACGTGAGCAACCAAAGATTGAGAAGTTATCTTTAAAGAAAAAGGGAATCGGATCTGAAGCGAGAGCAGAGCGAATGGCTAATGCTGACTCAGACTTGCAGTTATTGGGTGATGCTGAAAGAGGAAGACAGCTGCAAAAATTGAAGAAGAGAAGACTTCAAGGACGTGAAGATGAGGTTTTGGCAAAACTTGAGAAGTTTAAGAAAGGCTTTTCTGGAAAACCAGAACCTTCGAACGCTGAATCTGGGGGTGGTAATGATGATTTGTCAGACTGGAAATCTGTTAGGTTAAAATTCACACCAGAGCCTGGCAAGGACCGCATGTCACGTAGTGATGATCCAAATGACTACGTTGTGCATGACCCTCTTCTCGAGAAGGGGAAAGAGAAATTTAACAAAATGCAAGCCAAACAAAAACGACATCAAAACTACATTTCTCTATTCCCACGGAACATTGAAGATTTATTGAGGTTCATTATTGACAGCCATGCCCAATTGTTTCAGACACGCAAGGTTCTGAATTTGGAGAAAAAGAAACATTTTTATTCAGGGAGAGGGCTCTTGAAAGCATCATATTCTGTTCTGCTGTACCGCACATTCAGACTTGAAAAGTCTTCAACAACACATGTTCTTTCACCGAGTCGTTTCTGCCTTCAGACGCGCAAAGATAGTCGGCCGGCCATACTGCCAGGAAATTTACTCGTTTAA 2049 43.68 MSNWYGQGGNHRLNHNVAIHEDKAYNGSPSVSSVMEEWMICQLLQKFVKVVANPQFRSGMRDSSPKGFSKGPPARNDAPSHARLPISIKLAFCYLPLRSLGLSFRFVYVLEPPTRGKVVLNTTCGPLDIELWPKEAPKAVRNFVQLCLEGYYDNTIFHRIIKDFIVQGGDPTGSGTGGESIYGGVFPDEFHSRLRFKHRGLVACANAGSPHSNGSQFFITLSRCDDLDKKHTIFGKVTGDSIYNLTSLGEFETDKDNRPVDPPKIKSIEVLWNPFDDIVPRASAKPVPASTLDSENKDTKKKAVKKLNLLSFGEEAEEDEKELAAVKKKIKSSHDVLDDPRLLKAEIPSSELNSSDSKRTREMQLSVRETLASKKQESRRDSDAENSNLPQYSDSDDDEANFDARMRQQILRKRTELGDAPSHKSKNGTSDSKNNEGSTRRPSAENTKREQPKIEKLSLKKKGIGSEARAERMANADSDLQLLGDAERGRQLQKLKKRRLQGREDEVLAKLEKFKKGFSGKPEPSNAESGGGNDDLSDWKSVRLKFTPEPGKDRMSRSDDPNDYVVHDPLLEKGKEKFNKMQAKQKRHQNYISLFPRNIEDLLRFIIDSHAQLFQTRKVLNLEKKKHFYSGRGLLKASYSVLLYRTFRLEKSSTTHVLSPSRFCLQTRKDSRPAILPGNLLV 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31812645 31822423 + CrPI670011_05g019690.1 Cre05g1969 498482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1969 682 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 152 169 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cre05g1969 682 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 229 244 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre05g1969 682 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 216 228 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre05g1969 682 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 157 169 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre05g1969 682 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre05g1969 682 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 201 216 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre05g1969 682 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 125 270 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre05g1969 682 SUPERFAMILY Cyclophilin-like 117 283 IPR029000 -
Cre05g1969 682 Gene3D - 105 285 IPR029000 -
Cre05g1969 682 MobiDBLite consensus disorder prediction 58 79 - -
Cre05g1969 682 MobiDBLite consensus disorder prediction 442 474 - -
Cre05g1969 682 MobiDBLite consensus disorder prediction 347 483 - -
Cre05g1969 682 CDD cyclophilin_CeCYP16-like 111 281 - -
Cre05g1969 682 MobiDBLite consensus disorder prediction 515 541 - -
Cre05g1969 682 MobiDBLite consensus disorder prediction 398 421 - -
Cre05g1969 682 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 118 270 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre05g1969 682 MobiDBLite consensus disorder prediction 422 441 - -
Cre05g1969 682 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 104 282 - -
Cre05g1969 682 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 111 285 IPR044666 GO:0071013(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1969 K12737 - - csv:101211505 870.152
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0224 Cre-Chr1:1614111 Cre05g1969 Cre-Chr5:31812645 5.40E-18 dispersed
Cre05g1969 Cre-Chr5:31812645 Cre10g1992 Cre-Chr10:34607109 2.70E-38 dispersed
Cre05g1969 Cre-Chr5:31812645 Cre04g1378 Cre-Chr4:32602234 3.00E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g113 Blo01g01459 . Bda01g00628 . . Bpe02g00496 . Bma01g02208 . . Cma01g01723 . . . . . . . . . . . . . Cla05g01847 Cam05g1971 Cec05g1984 Cco05g2043 Clacu05g1964 Cmu05g1845 Cre05g1969 Cone4ag1675 Cone7ag1278 . . Lsi04g01412 . . . . . . . . . . . . Cmo01g01789 . . . Car01g01337 . . Cpe02g00272 Bhi09g03131 . . . Hepe01g1898 Mch11g0430 . . . . . . . . . . . Cme07g00208
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010515 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32