Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1972 ATGCATGCATTAGTTGATGACGGGTGGAAAGTGGAGAAGAGAGCCAAGCGGCTTAAGAAAGAAATTCCGAGTGGGATTGAATGTGTATCCACGCTCGAAGCAGCAGATAAGAAAAAGGGGCTAAGCCGGAGAACTTTTGAGAATGGGTTTTATGCTCTCACTGAGGTTTCTCTTCAAGTTCTTCTACCTGTTGCTATAGATTACAGATTCCGATTGAGGAGCTTCGTCGGAGTCGGCGGCGTTGATTCGGATCGGGAGGAGGAAGAGAAGGCAGAAGAAGAGGTGCAAGGTTCCAGCCTGACGATGGAAAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAACCATTACAGAGCTCAGATGAAGAACATTCAAGAACGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCATCGGATGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGATTATGTCGTGAGAAGAAATCTGGTGATATATATGCAATGAAAAAGTTGAAAAAATCTGAAATGCTGATGAGGGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCACTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAATACTTGTATTTGATCATGGAATATCTACCAGGTGGAGATATGATGACTCTGCTTATGAGAGAAGACACATTGACTGAAAATGTAGCTAAATTTTACATTGCACAGAGTGTTCTAGCAATAGAATCTATCCACAGGCACAGCTATATTCACAGGGATATTAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAACTTTCTGATTTTGGTCTCTGTAAGCCATTGGATTCTTTAACCCTATCAGCACTACATGAAAATAAAGCCATGGATGATGAAAATCTGGCAGAACCAATGGATATAGATGATAATAGGAGCAGTTGGAAGAGTCCCAGTGAACAGCTACACCATTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACTGTTGGAACACCAGATTATATAGCTCCAGAAGTATTGCTTAAAAAAGGATATGGAATGGAGTGTGACTGGTGGTCCCTCGGTGCAATTATGTATGAGATGCTTGTAGGTTACCCTCCATTTTACTCCGATGATCCAATCACCACCTGCAGAAAGATTGTTCATTGGAAAAATCACTTGAAGTTTCCAGAAGATGCTAAGTTAACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTGTGCGATGTTGAGCATAGACTTGGTACTGGAGGAGCATACCAAATTAAAGCCCATCCTTGGTTCAAAGATGTCGTCTGGGATAGGCTCTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCTCTGGACCGTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACATACAAGAACTTCGATGCTGTCAAAGGAGGGCTTCATGGATCACTTGATTCTCAGAGATTGTCAATGAAACAGCCTCCAATGGACGTATTAAATGGCACCGGGGGAGACTACACAACCGAACTAATAGGCAATGAGGCTGAAATGCAGATGTTACAGTTTACAATACAAAATGGATATATAAAGCAAACAACAATGCCTGAAGAGTTTCTAATCATGAGAGACCAGCTAAGTAATCAAGCACTTGGTGAAAAAGTTCTCTTTGGTCAAAGTTCTTTTTTCTCCATTTCCCCTTCTTCATTAATGGCTAATTATCAAGGAACTGGATAG 1941 41.52 MHALVDDGWKVEKRAKRLKKEIPSGIECVSTLEAADKKKGLSRRTFENGFYALTEVSLQVLLPVAIDYRFRLRSFVGVGGVDSDREEEEKAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHSYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDENLAEPMDIDDNRSSWKSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLKFPEDAKLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGGLHGSLDSQRLSMKQPPMDVLNGTGGDYTTELIGNEAEMQMLQFTIQNGYIKQTTMPEEFLIMRDQLSNQALGEKVLFGQSSFFSISPSSLMANYQGTG 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31843237 31851735 + CrPI670011_05g019720.1 Cre05g1972 498485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1972 646 Gene3D Phosphorylase Kinase; domain 1 165 259 - -
Cre05g1972 646 FunFam Non-specific serine/threonine protein kinase 258 325 - -
Cre05g1972 646 Pfam Protein kinase C terminal domain 494 539 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1972 646 Pfam Protein kinase domain 175 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1972 646 Pfam Protein kinase domain 366 475 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1972 646 ProSitePatterns Protein kinases ATP-binding region signature. 180 203 IPR017441 GO:0005524(InterPro)
Cre05g1972 646 ProSiteProfiles Protein kinase domain profile. 174 475 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1972 646 FunFam Non-specific serine/threonine protein kinase 494 504 - -
Cre05g1972 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1972 646 CDD STKc_NDR_like 172 540 - -
Cre05g1972 646 FunFam Non-specific serine/threonine protein kinase 374 493 - -
Cre05g1972 646 CDD MobB_NDR_LATS-like 108 169 - -
Cre05g1972 646 Gene3D Transferase(Phosphotransferase) domain 1 260 492 - -
Cre05g1972 646 PANTHER SERINE/THREONINE-PROTEIN KINASE 90 543 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cre05g1972 646 ProSiteProfiles AGC-kinase C-terminal domain profile. 476 549 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1972 646 FunFam Non-specific serine/threonine protein kinase 135 257 - -
Cre05g1972 646 SUPERFAMILY Protein kinase-like (PK-like) 171 521 IPR011009 -
Cre05g1972 646 SMART pkinase_C_6 476 541 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1972 646 SMART serkin_6 174 475 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1972 Cre-Chr5:31843237 Cre06g1468 Cre-Chr6:9225198 2.90E-183 dispersed
Cre04g2147 Cre-Chr4:38609801 Cre05g1972 Cre-Chr5:31843237 1.70E-181 transposed
Cre08g1541 Cre-Chr8:28032232 Cre05g1972 Cre-Chr5:31843237 3.60E-168 transposed
Cre03g1807 Cre-Chr3:34920700 Cre05g1972 Cre-Chr5:31843237 8.20E-224 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64162 PF00069 Pkinase 1.10E-42 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1972 K08790 - csv:101212228 1012.68