Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1982 ATGTCTAAAAATGACCTCGACATGGTGATGGACACGTGTCCACCCTCCTCGATCCTCAAAACCCTCGCGAACCTCCATAAATCTTGTCCTTTCTTCCTACTTGAGCTCTTTATTTCATTTCCTTCGCCTCCATTTTCGCTCTTAACCTTCCACTCTGCTTTCTGGGTTTTCTCCTTTCCAATCAAGGAGATTTTCTGGATTTGGGTTTGTGTTTGTTTGTTGCTGAAATCACCTGATTTCATTTTATTCTCCCCTTCGCTGAATTGGGTTGTGACTTGTGAGAAGAAACCCCATGATCGTATTGGATTTCGTGAACTGGCTAAGATGAGCCTGGATGCAGCAGAGGATGAATCAACCTCTGAAATTCATATTCCAGCAGAGATTGATTGGGATATGTTAGACAAATCCAAATTCTTTTTTCTGGGTGCTGCTTTATTTTCAGGTGTATCAACTGCTCTTTATCCTGTTGTTCTTTTGAAAACTCGACTTCAGGTTTCAGCTACCAAGGTATCATGCTTTAAAATGTCATACTCTATCATGCGTCATGAAGGCTTGAGGGGGTTTTACAGAGGATTTGGAACCTCTTTAATGGGAACTATCCCAGCTCGAGCCTTTTACATGGCAGCTCTTGAAGTTACCAAGAGTGGCGTTGGAAGTGCAACGATTAAGCTAGGCTTTTCAGACACCACAGCCATGGCTATAGCTAATGCAGCTGCAGGGTTGAGCTCAGCCATGGCTGCACAATTGGTTTGGACTCCAATAGATGTTGTAAGCCAAAGACTAATGGTTCAGGGCTGCAATATCAGTGCTAAAAACAGCGTTTCTAATCTTAATTCTTGCGTCTATAAAAATGGTATTGACGCTTTTAGAAAGATCATTTATGCTGATGGTTTGCGAGGATTATACAGGGGATTTGGGATTTCAATATTGACATATGCTCCATCAAATGCAGTTTGGTGGACTTCTTACTCTGTTGCTCACAGACTCATTTGGAGTGGTCTAGGCTACTACACAAGTAAGAAGGATGAAGGTTGTATTAATGGTGGTTATGGCTTTAAATCAGATTCTAAGGCAACGGTGGCAGTTCAGGGGTTGAGTGCAGCCTTGGCCAGTGGAGTTTCTGCTATCATAACAATGCCTCTGGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGCCAAAGACGCCCTCTAACAGCATTGCAGACCATAAGGAACTTGATTAAGGAAGGTGGACTGAATGCTTGTTATAGAGGGCTTGGTCCAAGATTGTTTGAGCAGATGATGAGAGATATGCAAAGGAAACATTGCAAGTTACATGATTGCCATTTTCTGACCATAGACTACAATGGGGAGAACAAAACAAAAAACAAGCTTTGTGCTTTGATGATTCAGTCTGCACAGTGA 1419 42.14 MSKNDLDMVMDTCPPSSILKTLANLHKSCPFFLLELFISFPSPPFSLLTFHSAFWVFSFPIKEIFWIWVCVCLLLKSPDFILFSPSLNWVVTCEKKPHDRIGFRELAKMSLDAAEDESTSEIHIPAEIDWDMLDKSKFFFLGAALFSGVSTALYPVVLLKTRLQVSATKVSCFKMSYSIMRHEGLRGFYRGFGTSLMGTIPARAFYMAALEVTKSGVGSATIKLGFSDTTAMAIANAAAGLSSAMAAQLVWTPIDVVSQRLMVQGCNISAKNSVSNLNSCVYKNGIDAFRKIIYADGLRGLYRGFGISILTYAPSNAVWWTSYSVAHRLIWSGLGYYTSKKDEGCINGGYGFKSDSKATVAVQGLSAALASGVSAIITMPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLIKEGGLNACYRGLGPRLFEQMMRDMQRKHCKLHDCHFLTIDYNGENKTKNKLCALMIQSAQ 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31905459 31908542 + CrPI670011_05g019820.1 Cre05g1982 498495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1982 472 PRINTS Mitochondrial carrier protein signature 148 166 IPR002067 GO:0055085(InterPro)
Cre05g1982 472 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085(InterPro)
Cre05g1982 472 PRINTS Mitochondrial carrier protein signature 240 262 IPR002067 GO:0055085(InterPro)
Cre05g1982 472 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 114 432 - -
Cre05g1982 472 ProSiteProfiles Solute carrier (Solcar) repeat profile. 231 329 IPR018108 -
Cre05g1982 472 Pfam Mitochondrial carrier protein 358 432 IPR018108 -
Cre05g1982 472 Pfam Mitochondrial carrier protein 234 330 IPR018108 -
Cre05g1982 472 Pfam Mitochondrial carrier protein 147 216 IPR018108 -
Cre05g1982 472 ProSiteProfiles Solute carrier (Solcar) repeat profile. 358 448 IPR018108 -
Cre05g1982 472 Gene3D Mitochondrial carrier domain 135 445 IPR023395 -
Cre05g1982 472 ProSiteProfiles Solute carrier (Solcar) repeat profile. 134 216 IPR018108 -
Cre05g1982 472 SUPERFAMILY Mitochondrial carrier 131 430 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1982 Cre-Chr5:31905459 Cre11g0975 Cre-Chr11:6996549 1.40E-62 dispersed
Cre05g1982 Cre-Chr5:31905459 Cre08g1650 Cre-Chr8:28994345 1.00E-12 wgd
Cre05g1982 Cre-Chr5:31905459 Cre09g0075 Cre-Chr9:1038528 1.80E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1982 K15121 - csv:101213436 598.201