Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1985 ATGCCATTGCCATTCTGCATACAAGCAACGCAAATTCCCAACTCTCCATATTCTCCATTCTCTCTTCACTGTGTTCCAGCGAAGAAGACGAAACACAGAGCGGGGATGAGGAAAAAGTCGCTTGATTCTGTTGTCTGCCATTTGTCTTTCTTCTTTATACTTCTTTTCTATGCCAGTTTCTGCTTTGCCAATCGCGATATGGAAGCGCTGTTGAAGATGAAGAGCGCCTTGATCGGACCGGGGAGGTCGGGGCTTGGTGATTGGGTGCCGTCGTCGTCCCCGTCTGCTCATTGTCATTTCTCTGGCGTTACGTGCGATGGTGAGAGTAGAGTTGTTGCGCTTAACGTCTCGAATCTCCGTCTATTTGGTCCAATTCCGCCGGAAATTGGGATGTTGGAGAAGATTGAGAACTTGACCTTAGTGAGTAATAATCTCACCGGAGGGCTTCCTCTTGAAATGGCGAAACTCACGTCGCTTAAATTTCTTAACCTATCTAACAACGCATTTGGTGTTAATTTAGCCGCGGAAATCACGTTAGGAATGACGGAACTCGAGGTTTTCGATATATATAACAATAATTTCTCTTGTCCACTCCCGGTGGAGTTTGTCAAACTGAAGAAGCTTAAGCATCTTGACCTTGGCGGATCCTACTTTAATGGCCAGATTCCTGCTGTTTACTCGGAGATGCAGTCGTTGGAGTTCTTGAGCGTGCGGGGAAATACGCTTTCCGGAAGGATTCCGGCGAGTTTGGCGCGGTTAAAGAATCTTAAATATCTATACGCCGGATATTTTAATCATTACGATGGCGGAATTCCGGCCGAGTTTGGATCGTTGAGTTCCCTGGAGCTTATCGATTTAGCCAACTGTAACCTCACCGGTGAAATTCCTCCGAGTTTGGGGAATTTGAAGCACCTGCATAGTTTATTTCTTCAAGTAAACAATCTTACCGGTCGGATTCCCCCTGAACTTTCCGGTCTGATTAGCCTCAAGTCATTGGACCTCTCGCTGAACGAACTTACCGGAGAGATACCGTCGAGTTTCGTGGCGCTGCAGAACCTTACGCTGATCAATTTGTTCAGCAACAAACTTCACGGTCCAATTCCTAGTTTCGTCGGTGATTTTCCACATCTCGAAGTGCTTCAGTTGTGGAGTAACAACTTCACGCTCGAACTCCCTGAGAATCTCGGGCGTAACGGAAAATTGTTTCTGCTCGACGTGGCGACAAATCATTTAACTGGGCTTATTCCTCCGGATTTATGTAACGGTAGGTTGAAGATTTTGATTCTGTTGGATAATTACTTTTTTGGGCCCATCCCTGAGAAATTAGGCCGGTGTGATTCGCTTACGAAAATAAGAATTGCGGGTAATTTCTTCAATGGAACGGTTCCGGCAGGGTTCTTCAACTTTCCGGCGTTGGAGCTACTCGATATCAGTAATAATTACTTTTCCGGCGCTCTTCCATCGCAAATGTCAGGGGAGTTTCTTGGAACTCTGCAGCTGAATAACAACAATATAACCGGGGAAATCCCGGCGGCGATTAAGAATTTAAAAAACTTGCAGGTTGTTTCTCTGGAACATAACCAATTCAACGGGAAATTGCCTGTGGAAATATTTGAATTGAGCAAGTTGCTGAGGATTAACATCAGCTTTAACAATATTAGCGGCGAGATCCCGCATTCGGTCGTTCATTGCACCTCTCTAACGTCAATTGATCTCAGTAAAAATGATCTTGTCGGCACAATTCCAAGAGGAATTTCGAAGCTGAAAATCTTGAGCGTCTTCAATTTGTCAAGAAATCACTTGACGGGCCAAATTCCGAATGAGATTCGGTCGATGATGAGCCTAACAACTCTGGATTTGTCATACAACAATTTTTTCGGTAGAATCCCCACCGGCGGTCAGTTTTCGGTATTCAACGGCAGCGCTTTCGTCGGAAACCCTAACCTCTGCTTCCCCCATGGGCCTTGCGCATCAATGCACAGGAATTTGAGGTCTGTTAAACTAATCATCCCAATCGTTGCGATATTCATCGCTCTATTATGCGCACTCGCTGCATTTTATCTACGGAAGAGAAAGAGGATTCAGAAGTCAAAGGCATGGAAACTCACAGCGTTCCAACGCCTGAACTTCAAAGCAGAGGACGTCCTTGAGTGTTTGAAGGAGGATAATATCATCGGCAAAGGCGGTGCCGGGGTCGTCTACCGTGGATCAATGCCAGACGGCTCCGTCGTTGCGATTAAACTATTGTTAGGAAGCGGCCGGAATGACCACGGTTTCTCGGCCGAAATTCAGACTCTAGGGCGAATCAAGCACCGGAATATCGTCAGGCTTTTGGGGTACGTGTCGAACAGGGATACGAATCTGCTGCTGTACGAATACATGCCTAATGGTAGCTTGGACCAGAGGCTGCATGGAGTGAAGGGCGGGCATTTGCACTGGGACTTACGGTACAAGATCGCAATGGAAGCCGCCAAGGGGCTCTGTTACTTGCACCATGATTGTACGCCGCTGATCATTCACAGAGACGTGAAGTCCAATAATATCCTACTCGATAAGCTGTTTGAGGCACATGTTTCTGACTTTGGGCTCGCCAAGTTCTTGCAGAACGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCCGGCTCCTACGGTTACATCGCTCCAGAATACGCCTACACTCTTAAAGTGGACGAGAAAAGCGACGTGTACAGTTTCGGTGTGGTACTGCTGGAGCTTATAGCCGGGAGGAAGCCAGTGGGGGATTTTGGAGAAGGCGTGGACATAGTCAGGTGGGTCCTCAAAACCACATCAGAACTCTCTCAACCGTCGGATGCAGCCTCAGTATTAGCTGTGGTGGACTCGCGCCTCACAGAATACCCTCTCCAAGGTGTAATCCATCTGTTCAAAATAGCCATGATGTGCGTTGAAGAAGACAGCTCTGCAAGGCCAACCATGAGAGAGGTTGTCCACATGCTCTCCAATCCTCCCAGGTCTGCCCCTACTCTCATCAACCTCTAA 3018 47.45 MPLPFCIQATQIPNSPYSPFSLHCVPAKKTKHRAGMRKKSLDSVVCHLSFFFILLFYASFCFANRDMEALLKMKSALIGPGRSGLGDWVPSSSPSAHCHFSGVTCDGESRVVALNVSNLRLFGPIPPEIGMLEKIENLTLVSNNLTGGLPLEMAKLTSLKFLNLSNNAFGVNLAAEITLGMTELEVFDIYNNNFSCPLPVEFVKLKKLKHLDLGGSYFNGQIPAVYSEMQSLEFLSVRGNTLSGRIPASLARLKNLKYLYAGYFNHYDGGIPAEFGSLSSLELIDLANCNLTGEIPPSLGNLKHLHSLFLQVNNLTGRIPPELSGLISLKSLDLSLNELTGEIPSSFVALQNLTLINLFSNKLHGPIPSFVGDFPHLEVLQLWSNNFTLELPENLGRNGKLFLLDVATNHLTGLIPPDLCNGRLKILILLDNYFFGPIPEKLGRCDSLTKIRIAGNFFNGTVPAGFFNFPALELLDISNNYFSGALPSQMSGEFLGTLQLNNNNITGEIPAAIKNLKNLQVVSLEHNQFNGKLPVEIFELSKLLRINISFNNISGEIPHSVVHCTSLTSIDLSKNDLVGTIPRGISKLKILSVFNLSRNHLTGQIPNEIRSMMSLTTLDLSYNNFFGRIPTGGQFSVFNGSAFVGNPNLCFPHGPCASMHRNLRSVKLIIPIVAIFIALLCALAAFYLRKRKRIQKSKAWKLTAFQRLNFKAEDVLECLKEDNIIGKGGAGVVYRGSMPDGSVVAIKLLLGSGRNDHGFSAEIQTLGRIKHRNIVRLLGYVSNRDTNLLLYEYMPNGSLDQRLHGVKGGHLHWDLRYKIAMEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKLFEAHVSDFGLAKFLQNGGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVLKTTSELSQPSDAASVLAVVDSRLTEYPLQGVIHLFKIAMMCVEEDSSARPTMREVVHMLSNPPRSAPTLINL 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31939174 31944070 + CrPI670011_05g019850.1 Cre05g1985 498498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1985 1005 Gene3D Ribonuclease Inhibitor 181 265 IPR032675 -
Cre05g1985 1005 Gene3D Ribonuclease Inhibitor 266 369 IPR032675 -
Cre05g1985 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 838 850 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1985 1005 SUPERFAMILY L domain-like 105 434 - -
Cre05g1985 1005 Gene3D Ribonuclease Inhibitor 65 180 IPR032675 -
Cre05g1985 1005 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 266 370 - -
Cre05g1985 1005 Gene3D Phosphorylase Kinase; domain 1 684 793 - -
Cre05g1985 1005 Pfam Leucine rich repeat N-terminal domain 64 106 IPR013210 -
Cre05g1985 1005 SUPERFAMILY L domain-like 415 658 - -
Cre05g1985 1005 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 50 993 IPR050647 -
Cre05g1985 1005 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 794 1003 - -
Cre05g1985 1005 FunFam LRR receptor-like serine/threonine-protein kinase EFR 371 662 - -
Cre05g1985 1005 SMART LRR_typ_2 156 180 IPR003591 -
Cre05g1985 1005 SMART LRR_typ_2 588 612 IPR003591 -
Cre05g1985 1005 SMART LRR_typ_2 516 540 IPR003591 -
Cre05g1985 1005 SMART LRR_typ_2 326 350 IPR003591 -
Cre05g1985 1005 SMART LRR_typ_2 278 302 IPR003591 -
Cre05g1985 1005 SMART LRR_typ_2 374 398 IPR003591 -
Cre05g1985 1005 Pfam Leucine rich repeat 566 625 IPR001611 GO:0005515(InterPro)
Cre05g1985 1005 Gene3D Ribonuclease Inhibitor 370 662 IPR032675 -
Cre05g1985 1005 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 688 793 - -
Cre05g1985 1005 Pfam Leucine Rich Repeat 231 253 IPR001611 GO:0005515(InterPro)
Cre05g1985 1005 Pfam Leucine Rich Repeat 280 302 IPR001611 GO:0005515(InterPro)
Cre05g1985 1005 Pfam Leucine Rich Repeat 472 490 IPR001611 GO:0005515(InterPro)
Cre05g1985 1005 Pfam Leucine Rich Repeat 328 348 IPR001611 GO:0005515(InterPro)
Cre05g1985 1005 Pfam Leucine Rich Repeat 497 516 IPR001611 GO:0005515(InterPro)
Cre05g1985 1005 ProSiteProfiles Protein kinase domain profile. 719 1002 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1985 1005 Gene3D Transferase(Phosphotransferase) domain 1 794 999 - -
Cre05g1985 1005 SMART serkin_6 719 992 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1985 1005 SUPERFAMILY Protein kinase-like (PK-like) 710 992 IPR011009 -
Cre05g1985 1005 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 178 265 - -
Cre05g1985 1005 Pfam Protein kinase domain 721 990 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1985 Cre-Chr5:31939174 Cre10g0980 Cre-Chr10:14300229 1.10E-08 dispersed
Cre05g1985 Cre-Chr5:31939174 Cre04g1420 Cre-Chr4:32992807 4.20E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64163 PF00069 Pkinase 1.80E-42 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1985 - - - 0.0