Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1989 ATGGGTTCAACACAATTTTCATTTCTATTATATCTTCTTACAATCCAAATTTCAGTATCAGGAGTATTTTCCACCACTTTCAGCATAGTAAATAAATGTGATTACACAGTTTGGCCGGGAATTCTCTCAAACGCCGGAGTTCCACCACTTCCCACCACAGGCTTCGTCCTTGCCGCCGGCGAGTCCAAAACAATCTCCGCTCCGGCATCTTGGGGTGGCCGATTCTGGGGCCGAACTCGCTGTTCAGAAGACTCCACCGGAAAATTCTCTTGCCTCACTGGAGATTGCGGCTCCAACAAGGTCGAGTGCAGTGGAAACGGCGCGAAGCCACCGGCAACTCTGGCGGAGTTCACCCTTGACGGTGCCGGCGGGTTGGACTTCTTCGACGTGAGTTTGGTCGACGGTTACAATATCCCTATGCTGGTGGTCCCACAAGGTGGCACCGGCGAGAAATGCGTGAGCACGGGATGCGTTGTGGATTTGAACGGCGCGTGTCCTCAAGAACTCAAGGTTATGAGCGTTGACGGCGGAGATAACGTCGCGTGTAAAAGCGCGTGCGAAGCATTTAACCAACCGCAATTCTGTTGCAGTGGCGAGTACGCGACTCCCGATACTTGTAAACCTTCTGCGTACTCGCAGGTGTTCAAAAACGCGTGCCCACGCGCTTACAGCTACGCTTACGACGACACGACTAGCACGTTTACATGTGCCGACGCTGATTATATTATAACATTCTGCCCTTCACCCAACACTAGTCAGAAATCAACGGACAATCACAACACAAACACGCCGGCGATCAACGGCGGAAACGGTACAATGGTTTACGAAGGGGCTGAGTATGATCTAAGCGGCGCGTCGACAACAACGCTCCGCCAATTTCTTGGGGTAGTCGTTGCCGCCGTGGCAATTCTTCAAATTCAGCAACTCGTTTGA 933 51.88 MGSTQFSFLLYLLTIQISVSGVFSTTFSIVNKCDYTVWPGILSNAGVPPLPTTGFVLAAGESKTISAPASWGGRFWGRTRCSEDSTGKFSCLTGDCGSNKVECSGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGTGEKCVSTGCVVDLNGACPQELKVMSVDGGDNVACKSACEAFNQPQFCCSGEYATPDTCKPSAYSQVFKNACPRAYSYAYDDTTSTFTCADADYIITFCPSPNTSQKSTDNHNTNTPAINGGNGTMVYEGAEYDLSGASTTTLRQFLGVVVAAVAILQIQQLV 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31969226 31970784 - CrPI670011_05g019890.1 Cre05g1989 498502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1989 310 Gene3D Thaumatin 25 247 IPR037176 -
Cre05g1989 310 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cre05g1989 310 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cre05g1989 310 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cre05g1989 310 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cre05g1989 310 PANTHER OS03G0233200 PROTEIN 9 247 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cre05g1989 310 SMART tha2 27 247 IPR001938 -
Cre05g1989 310 CDD TLP-PA 26 246 - -
Cre05g1989 310 PIRSF PR5 1 280 IPR001938 -
Cre05g1989 310 Pfam Thaumatin family 31 247 IPR001938 -
Cre05g1989 310 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Cre05g1989 310 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Cre05g1989 310 SUPERFAMILY Osmotin, thaumatin-like protein 25 248 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1989 Cre-Chr5:31969226 Cre08g1372 Cre-Chr8:26746201 7.70E-126 dispersed
Cre05g2634 Cre-Chr5:37388781 Cre05g1989 Cre-Chr5:31969226 1.90E-76 transposed
Cre04g1652 Cre-Chr4:34895415 Cre05g1989 Cre-Chr5:31969226 3.90E-77 wgd
Cre05g1989 Cre-Chr5:31969226 Cre08g1370 Cre-Chr8:26729300 1.70E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1989 - - - 0.0