Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1994 ATGGGAAAGAGCGATACATCTCAAGCTTCCATTGAACGGCGAAATTGGGGCAAAATCTTCAATGGTCTCACACAAATGCTACAGACGCAACAAAATCAGCTCGAAACGCTCGTCAACGAGCGAAAACTTCTCGAAGACCGCATTAAAATGCAGCACGAACGATGGATCGCTGATATTCGTCTTTACGAGGATCATATCTCTCAGATGAAGGATGATTTGTTATTGCAAGATATGGAACGCTCACTTCAATCCTCGAAATCAGATCTGCTAACTGGAATGAAGCAGTCGGAGTTGTATCTCTGCCGACTGAAAATAGAACATTCAGAAGCAGAGTTGGAAGATTTCAAATCTTTCTTTGACGATCTTATCTCTCATAGAAACTCCAATCCACAAGACTCATCTTTGAGAAGTGCATCAGAACCAGCTCAGGCAAATGGTGGAAGAGAAAGTGGTTTGTCCGCATGTGGAAATACAGACGAAGCGAGACGTTCTAAGGCATTGGAAGGTGAAGTAAGGAGGTTGAGGTGTGAATATGAAAAACTTGCCTCAGAAAAGAGTTTGGAGGTGTCTGCGCTGGTGGCCGAGAAGAAATTTGTATGGAATCAGTATAATGTTATACAAGATGACTTCTCAAGTAAATTGGAGACTAAGCAGTTAGAGCTTGAACGTGCACACCTAGAGGTAGAGAAACTTCTAGCCACATTGGAACAATTACAAAGCTCAAACAATGAGAAGGATGGTGTTATTGCAACGTTAAGAAACCAAATGGGGAAGATGGAAACTGACTCATGTAAATTAAAAGACGAAATTTCCAGACTCTCACACAATTTAGAACTGCAAAGGAAGTCTATGAATGCAACTGCCACACCTGTGCTAAACCCATGCAAGGCAGGAACTAGGCCATCTAGTTTGGGAGGCAAAAATGGCACGAAAAGCAGAAGTAATGTCATTGTTAACAAAGACGCATCTTCTGCACAACCTTCTCATTCGGGAAACCAAAAGAAGAGAGGCGCTGATGATATTTCATTTCTAGGGACTCCAAGGTTGTTTACCTCTAGTTTCAAGGTCCCTAAACTGAAGAACGAACTCAATTTGTAG 1098 41.99 MGKSDTSQASIERRNWGKIFNGLTQMLQTQQNQLETLVNERKLLEDRIKMQHERWIADIRLYEDHISQMKDDLLLQDMERSLQSSKSDLLTGMKQSELYLCRLKIEHSEAELEDFKSFFDDLISHRNSNPQDSSLRSASEPAQANGGRESGLSACGNTDEARRSKALEGEVRRLRCEYEKLASEKSLEVSALVAEKKFVWNQYNVIQDDFSSKLETKQLELERAHLEVEKLLATLEQLQSSNNEKDGVIATLRNQMGKMETDSCKLKDEISRLSHNLELQRKSMNATATPVLNPCKAGTRPSSLGGKNGTKSRSNVIVNKDASSAQPSHSGNQKKRGADDISFLGTPRLFTSSFKVPKLKNELNL 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32006983 32008798 - CrPI670011_05g019940.1 Cre05g1994 498507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1994 365 MobiDBLite consensus disorder prediction 286 313 - -
Cre05g1994 365 MobiDBLite consensus disorder prediction 321 340 - -
Cre05g1994 365 Coils Coil 20 54 - -
Cre05g1994 365 PANTHER CYTOMATRIX PROTEIN-LIKE PROTEIN 1 362 - -
Cre05g1994 365 MobiDBLite consensus disorder prediction 129 152 - -
Cre05g1994 365 MobiDBLite consensus disorder prediction 129 159 - -
Cre05g1994 365 Coils Coil 214 255 - -
Cre05g1994 365 Coils Coil 164 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1994 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1994 Cre-Chr5:32006983 Cre08g1377 Cre-Chr8:26794131 8.10E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1111 . . . . . . . . Cmo05g00309 . Cma01g01973 . Car01g01544 . Sed11g1087 . . Bhi04g00148 Tan02g2076 Cmetu03g0470 . Hepe10g0153 . Lcy13g1911 Cla08g01421 Cam08g1901 Cec08g1478 Cco08g1611 Clacu08g1592 . Cre08g1377 . . Cone17ag1404 Cone20ag0078 Lsi04g01747 Csa03g04282 Chy04g00415 Cme03g01880 . . Bda08g01219 . . Bpe05g00140 . Bma05g00165 Sed13g1568 Cmo01g02031 . . Cma05g00306 Car05g00254 . Cpe11g00255 Cpe02g00069 Bhi09g02085 Tan01g5020 Cmetu04g2273 . Hepe01g1612 Mch11g0114 . Cla05g01868 Cam05g1997 Cec05g2009 Cco05g2067 Clacu05g1989 Cmu05g1870 Cre05g1994 Lsi08g01317 Csa02g02134 Chy03g01385 Cme04g00466
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002757 1 4 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 1 57