Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2002 ATGGCACTCCTAACTAATTCCTCTACTGACCACAAGAAACCCCTCCGTAATAAACGCCGGAAAAAACACCCAACCCCAACACCGCCACCCTCCTCCGCCCAATCCTCATGGGACCATTTCAAGAATCTCATCACCTGCAAACAGGTTGAGGTTTCGAGATCAGTTCAGGAGCCGACGAAACGGTCACCGGCCTACTCCAAATTGGGCTCTTCTTGCAGTTCAATATGTAGCTTTAGAGATGTGGTTCATGGCAATGCTAAAGTGGTTCATAGAGCCGACAACTCACCGGAAAGCAGCTCCGTCGGACAAGAAACCAGGTTGCTTACTAGAAAACCTGCTAACGGCTCTTCCTCTCGTTCTTTAACCGCGCCGCCACCGCCATCCAGAACTAAAACCGCTGCTTCGGCTTCTGCTTCCTACAATTCCTCGTCTTCTAGAGGATTACAATTACGAAAGCTTTCTGGGTGTTACGAATGCCACACCATCGTTGACCCTAGCAGGTACCCAATTCCAAGGAGTTCCCTATGTCCTTGTCCTCAATGTGGAGAGGTCTTCCCTAAGGCTGAAAGCTTAGAGCTTCACCAATTAGTTCGCCACGCTGTTTCGGAATTGGGTCCTGACGATTCGGGTCGAAACATCGTGGAGATAATTTTCAAATCAAGCTGGCTGAAAAAGGACCGTCCAATTTGCAAGATCGAACGGATATTAAAGGTCCACAATACCCAACGCACCATCCAACGGTTTGAGGATTGCCGTGACGCAGTGAAGACACGTGCGCTCGGAAGCACCAGAAAAAACCCGCGATGTGCGGCTGACGGTAATGAGCTGTTGCGGTTCCATTGTAGCGCCTTGTGGTGTGACCTCGGCTCACGTGGCTCAACCGGCTTGTGCGGCTCGATTCCCGGCTGCGGTGTCTGCAGTGTAATTCGTCATGGATTCCAGTGTAAGCCCGGTGGGCCCCCTGGTGTACGGACCACCGCTAGTAGTGGTAGGGCCCACGATTCGTTTGAATGCGGTGACGGAAGGCGACGTGCGATGTTGGTCTGCCGTGTAATCGCCGGGCGAGTGAAGCGGATCTCGGAAGAGGCTGCGACGGCGACAGCGACAGCGACGGAGGAGGAGAATCTGTCGACGGCGGCAGCCTCATACGACTCCGTTTCACGACACGCCGGGATGTACTCCAATCTCGAGGAGTTGATCATTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTTGTCATCTACGAAGCGCTCCAAACCTAA 1263 52.65 MALLTNSSTDHKKPLRNKRRKKHPTPTPPPSSAQSSWDHFKNLITCKQVEVSRSVQEPTKRSPAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLTRKPANGSSSRSLTAPPPPSRTKTAASASASYNSSSSRGLQLRKLSGCYECHTIVDPSRYPIPRSSLCPCPQCGEVFPKAESLELHQLVRHAVSELGPDDSGRNIVEIIFKSSWLKKDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALGSTRKNPRCAADGNELLRFHCSALWCDLGSRGSTGLCGSIPGCGVCSVIRHGFQCKPGGPPGVRTTASSGRAHDSFECGDGRRRAMLVCRVIAGRVKRISEEAATATATATEEENLSTAAASYDSVSRHAGMYSNLEELIIFNPKAILPCFVVIYEALQT 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32052705 32054982 - CrPI670011_05g020020.1 Cre05g2002 498515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2002 420 Gene3D - 200 417 - -
Cre05g2002 420 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 204 IPR013087 -
Cre05g2002 420 MobiDBLite consensus disorder prediction 89 141 - -
Cre05g2002 420 MobiDBLite consensus disorder prediction 92 141 - -
Cre05g2002 420 MobiDBLite consensus disorder prediction 51 71 - -
Cre05g2002 420 MobiDBLite consensus disorder prediction 1 39 - -
Cre05g2002 420 ProSitePatterns Zinc finger C2H2 type domain signature. 176 199 IPR013087 -
Cre05g2002 420 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 35 415 - -
Cre05g2002 420 SUPERFAMILY ADP-ribosylation 201 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1235 Cre-Chr3:13960451 Cre05g2002 Cre-Chr5:32052705 5.30E-85 dispersed
Cre03g1238 Cre-Chr3:14068257 Cre05g2002 Cre-Chr5:32052705 1.40E-29 dispersed
Cre05g1652 Cre-Chr5:27364797 Cre05g2002 Cre-Chr5:32052705 1.20E-47 dispersed
Cre05g2002 Cre-Chr5:32052705 Cre09g2135 Cre-Chr9:40333348 2.10E-25 dispersed
Cre05g2002 Cre-Chr5:32052705 Cre10g0827 Cre-Chr10:8926570 1.20E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53735 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2002 - - - 0.0