Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre05g2018 | ATGTCGGCCGGACTCGGAAAATGCAGCAAAATCCGGCACATTGTCAGGCTCCGACAAATGCTCCGACGGTGGCGCAACAAGGCTAGAATGTCCGCTAATCGCATCCCTTCCGACGTACCCGCCGGACATGTGGCTGTCTGTGTCGGAACCAGCTGCCGGCGCTTCGTCGTCCGGGCCACTTACTTGAACCACCCGGTTTTCAAGAAGCTTCTGGTCCAAGCCGAAGAGGAGTACGGGTTCACCAATCAAGGCCCTTTGGCAATTCCTTGCGAAGAGTCGGTATTTGAAGAAGTCATCCGGTTCATCTCCAGATCCGAGTCTCCCAACTCGGGTCGGTTCGTGAAATTGGACGATTTTCAAAGTTATTGTCATATCGGAATCAGAACCGGGCTCGATTTATGGCCGGAATCCCGGCCTTTGCTTCATGGGTTGGCCGAGAAATCCATTTGCTCCGGAGAATGCTTATGGAGATGGCAAAACTGGTGGAGGGATCATTTCACCGTGTCGTCCCGAGCCCGAATCGGAGTCGGGGCGAAACCGAGAAGGAAGAAGAACAACAACGACAACAGAGAAAGTGTTGCTAATTTGGCCAGAGGTCTATTTTCTGTAAATTAA | 615 | 52.36 | MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCEESVFEEVIRFISRSESPNSGRFVKLDDFQSYCHIGIRTGLDLWPESRPLLHGLAEKSICSGECLWRWQNWWRDHFTVSSRARIGVGAKPRRKKNNNDNRESVANLARGLFSVN | 204 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 32187649 | 32188558 | - | CrPI670011_05g020180.1 | Cre05g2018 | 498531 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre05g2018 | 204 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 17 | 101 | IPR003676 | GO:0009733(InterPro) | |
| Cre05g2018 | 204 | Pfam | Auxin responsive protein | 16 | 102 | IPR003676 | GO:0009733(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre02g0810 | Cre-Chr2:4872610 | Cre05g2018 | Cre-Chr5:32187649 | 9.90E-50 | transposed | |
| Cre05g2797 | Cre-Chr5:38697282 | Cre05g2018 | Cre-Chr5:32187649 | 6.50E-18 | transposed | |
| Cre11g0873 | Cre-Chr11:5839461 | Cre05g2018 | Cre-Chr5:32187649 | 4.60E-47 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre05g2018 | K14488 | - | csv:101216342 | 301.597 |