Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2020 ATGGGCTCTGTGGAAGAGAAGCTCAAGACATCAGGGGGGTTGATTAATAACGGCCCACAGACTAACCTTCTCGACGAGATGAAGTTGTTGAAAGAAATGCAAGATCAAACAGGGGCCCGGAAGGCTATAAACTCCGAGTTATGGCACGCTTGTGCAGGTCCGCTTGTTTCCTTGCCCCATGTGGGTAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACAGCAACCTCACAGATTCCAAATTATCCCAATCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAATGTTACCTTACATGCCGATAAAGATTCAGATGAAATCTACGCTCAAATGAGTCTTCAACCGGTGAACTCTGAAAAAGATGTCTTCTTAGTTCCGGACTTTGGACTAAGGCCGAGTAAACACCCAAATGAGTTTTTCTGCAAAACTTTAACTGCCAGTGACACCAGCACACATGGTGGGTTCTCAGTGCCACGCAGGGCTGCTGAAAAACTCTTTCCTCCATTGGATTACACAATGCAACCGCCAACTCAGGAGCTCGTTGTTAGAGACTTGCATGACAATACCTGGACTTTTCGCCACATATACCGCGGGCAGCCGAAGCGACACCTTCTCACAACTGGGTGGAGTCTATTCGTTGGGGCAAAGAGGCTTAGAGCAGGCGATTCTGTCCTTTTTATAAGGGATGAAAAGTCCCAGTTGCTTATTGGAGTGAGGCGTGCTAACCGGCAACAAACAACATTGCCATCATCAGTTCTATCTGCCGATAGTATGCATATTGGGGTTCTTGCAGCTGCAGCTCATGCTGCTGCTAATCGAAGTCCATTTACAATCTTCTACAACCCCAGGGCATGTCCTTCAGAATTTGTTATTCCTTTAGCCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTCGGGATGATGTTTGAAACAGAAGAGTCCGGTAAACGCCGATATATGGGAACAATTGTTGGAATTAGCGATTTAGATCCACTTAGGTGGCCAGGTTCCAAGTGGAGAAATCTTCAGGTTGAGTGGGATGAGCCAGGATGCTGCGATAAGCAGAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTATTCATTTTTCCTTCTCTGACTTCAGGTCTTAAACGTCCATTACACGGTGGATTTTTGGGAGAAACTGACTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATATACGTGGGGATCTTTCATATGCGCCAACTTTATGCTCGGAACCACTGATGAAGATGCTACTGAGGCCTCAAATGGTTAACCTTCAGGGAACCACCTTACAGCAGGATTCAGTTAACAATTTAGTTAAGATACAGGACATGAAGGACATGCAGCCAGTGACCAAAATGCAGCAACTTATACCATCAGAAACTGCATCTCCCGGGAATCAAAATCATCATCATCATCCAGCACCTACACAATCTGATGTCATAAACCCAAATTCATCACCAAAAGAAAATCTACCCGGAAAAGTACACACTTCGGCGGCCATTGAAAGTGAAGCTCCAACTGCAGCTGATGTAGACAAGGCGAAATATGAACGTGATCTTTCAACCAATCAGTCCAATCCATTGCCCTCAGTTGGAGATTGTGGGGAGGAAAAACTCACTGGTAACGAAGTGAATATGCAAACGCTTGTAAACCAGCTTTCATTTGTGAACCAGAATCAGATTCCCATGCAGTTGCAATCCGTATCATGGCCCATGCAGCCGCAGCTTGAGTCACTAATCCAACACCCACAACCAACTGACATGCCTCAGCCTGAATTTACGAGTTCAAATGGTTTGATTTCATCCTTGGACGGCGATGGATGTTTGATTAACCCATCCTGTCTGCCTCTTCCTGGAGTAATGAGATCACCAGGGAATCTTTCCATGTTGGGACTGCAAGACTCTTCAACAGTCTTTCCTGAGGCTCTTAATTTTCCCTTACCCTCAACAGGCCAAGACATGTGGGATCCTCTTAACAATATAAGGTTCTCATCCCAAACCAATCATCTCGTCTCATTCTCTCATCCAGACGTATCTAACCTCAACTGTATGGCTAATGCAAATATTATGAGAGATGTTTCAGATGAAAGCAACAACCAAAGTGGGATATACAGTTGTTCTAACCTTGAAATCAGTAATGGTGGAAGTACTTTGGTTGATCATGCCGTTTCAAGTACTATTCTTGATGATTATTGCACATTGAAAGATGCTGACTTCCCACATCCTTCAGATTGCTTGGCTGGGAACTTCAGTTCGAGCCAAGATGTTCAGTCTCAGATTACCTCTGCTAGTCTGGGAGATTCTCAGGCTTTCTCTAGGCAAGAGTTCCATGATAATTCAGGTGGTACATCCTCATGCAATGTGGATTTTGATGAGGGCAGTCTTCTGCAGAATGGCTCATGGAAGCAAGTGGTACCGCCCTTGAGAACTTACACGAAGGTCCAGAAGGCGGGATCTGTTGGGAGATCTATTGATGTCACTAGTTTTAAGAACTACGACGAACTGTGCTCTGCTATCGAATGTATGTTTGGACTTGAGGGGTTGCTTAATGACCCAAGAGGGTCGGGATGGAAACTGGTTTATGTGGATTATGAGAATGATGTCCTGCTTATTGGTGATGACCCGTGGGAGGAATTTGTTAGCTGTGTACGGTGTATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGCGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGATCCTGGCCTGAAATTTATCTGGGTATGCGAGGTTCACGATGGAGCCATATCTTTGTTGCCTGTCTTTCATTTGCATATTTCCATTGTCTAG 2901 44.88 MGSVEEKLKTSGGLINNGPQTNLLDEMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWGSLVKRPMLRVPENIRGDLSYAPTLCSEPLMKMLLRPQMVNLQGTTLQQDSVNNLVKIQDMKDMQPVTKMQQLIPSETASPGNQNHHHHPAPTQSDVINPNSSPKENLPGKVHTSAAIESEAPTAADVDKAKYERDLSTNQSNPLPSVGDCGEEKLTGNEVNMQTLVNQLSFVNQNQIPMQLQSVSWPMQPQLESLIQHPQPTDMPQPEFTSSNGLISSLDGDGCLINPSCLPLPGVMRSPGNLSMLGLQDSSTVFPEALNFPLPSTGQDMWDPLNNIRFSSQTNHLVSFSHPDVSNLNCMANANIMRDVSDESNNQSGIYSCSNLEISNGGSTLVDHAVSSTILDDYCTLKDADFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDEGSLLQNGSWKQVVPPLRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQDPGLKFIWVCEVHDGAISLLPVFHLHISIV 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32216306 32221156 + CrPI670011_05g020200.1 Cre05g2020 498533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2020 966 SUPERFAMILY CAD & PB1 domains 836 913 - -
Cre05g2020 966 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677(InterPro)
Cre05g2020 966 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 926 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre05g2020 966 FunFam Auxin response factor 313 385 - -
Cre05g2020 966 Gene3D - 147 250 IPR015300 -
Cre05g2020 966 MobiDBLite consensus disorder prediction 484 538 - -
Cre05g2020 966 Gene3D - 313 385 - -
Cre05g2020 966 FunFam Auxin response factor 830 923 - -
Cre05g2020 966 FunFam Auxin response factor 147 251 - -
Cre05g2020 966 Pfam AUX/IAA family 835 922 IPR033389 -
Cre05g2020 966 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Cre05g2020 966 ProSiteProfiles PB1 domain profile. 834 918 IPR053793 -
Cre05g2020 966 Pfam Auxin response factor 275 358 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre05g2020 966 SMART B3_2 149 251 IPR003340 GO:0003677(InterPro)
Cre05g2020 966 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677(InterPro)
Cre05g2020 966 MobiDBLite consensus disorder prediction 484 517 - -
Cre05g2020 966 CDD B3_DNA 148 249 IPR003340 GO:0003677(InterPro)
Cre05g2020 966 Gene3D - 831 923 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1075 Cre-Chr3:9915849 Cre05g2020 Cre-Chr5:32216306 9.30E-172 dispersed
Cre05g2020 Cre-Chr5:32216306 Cre11g0629 Cre-Chr11:3472763 7.40E-175 dispersed
Cre05g2020 Cre-Chr5:32216306 Cre04g2093 Cre-Chr4:38145730 6.30E-174 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53736 PF02309 AUX_IAA 1.10E-09 CL0072 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2020 K14486 - csv:101216825 1823.91