Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2027 ATGGAGTTATTCCGTCTTCGAGCGGAGGCTGAGATCATGCCACCGTCTCCCCTCCGACCTTTGGCGTTTCTGGTCGTCGCCCTTTGGCCGTTCAGAAACAGAAACTCCGTCCAACTCCGACGATTCGTTCACCGGCACAACAAATTTTCCGATGGTGAGTTGCGTATATGGGACACGGTCCAGCATAGGACGGTATCATCGGCATGGGTGCATAGTGCTGCTCACGGAATTATTAGTGTTGCTTGCAGTCGTTCTATTGGGACAAATAGAGTTGTCAGCCAGGGTAGGGATGGAACTGTAAAGTGCTGGGATATTGATGATAGGGCTCTGTCCAGAGTTCCCTCTGTCACAATCAAGACAAATGCCTATCACTTTTGCAAACTCTCCTTGGTGAAGCAGCCTTCTTCTGATTTTTCAAGCCACCATGATGGTCCTAAGTGTATTAATGATCGAGATGAGAAGCCTGTTGATGCGGAAACTTTGGGCTGCAGTGGAGAGAAGGCTCAAGGATTTTCTACTGAGCACGCATGCAGATCAGAAGCTGATGGGCTGAAGTATGTGGCTGTCGCAGGGGAGCGATCTTCAGAGGTTGAAATTTGGGATCTGAATGCTGGGGATAGGTTGCTACGACTCCCTCCAAACGGGGAACGGGATTGCCCAAATATCTCTACCAAGGATAGAGGATTGTGCATGGCAGTTCAAGCCTTTTTACCGTCTAAATCTCAGGGATTCTTAAATGTCTTGTCTGGATACGAGGATGGTTCCATGCTTTGGTGGGATCTTAGGAATCCGGCAGTCCCAGTAACATCAGTGAAGTGTCATTTAGAGCCAGTTTTAAGCATTTGCATTGATGGATCGTGCCATGGTGGTATCTCAGGAGCTGCAGATGACAAAGTTGTGATGTTTAGTTTGGATCATTCCACGGGGACATGCCTGGTGAAGAAAGAAATTACTTTGGAACGGCCTGGGATAGCAAAGGTCTCTATTCGGCCAGATAACAAGATTGCTGCAACTGCTGGCTGGGATCACAGAGTGCGGATATATAATTATCGAAAAGGAAATCCTCTTGCTATATTGAAGTACCATCAGGCCTTGTGTAATGCTGTATCATACTCGGACGACTGTAAGTTAATGGCATCTGCATCAGACGACAGAACTGTGGCACTTTGGGAACTCTATCCTCCTCGAACTTAA 1194 47.49 MELFRLRAEAEIMPPSPLRPLAFLVVALWPFRNRNSVQLRRFVHRHNKFSDGELRIWDTVQHRTVSSAWVHSAAHGIISVACSRSIGTNRVVSQGRDGTVKCWDIDDRALSRVPSVTIKTNAYHFCKLSLVKQPSSDFSSHHDGPKCINDRDEKPVDAETLGCSGEKAQGFSTEHACRSEADGLKYVAVAGERSSEVEIWDLNAGDRLLRLPPNGERDCPNISTKDRGLCMAVQAFLPSKSQGFLNVLSGYEDGSMLWWDLRNPAVPVTSVKCHLEPVLSICIDGSCHGGISGAADDKVVMFSLDHSTGTCLVKKEITLERPGIAKVSIRPDNKIAATAGWDHRVRIYNYRKGNPLAILKYHQALCNAVSYSDDCKLMASASDDRTVALWELYPPRT 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32266263 32270771 - CrPI670011_05g020270.1 Cre05g2027 498540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2027 397 Gene3D - 48 223 IPR015943 GO:0005515(InterPro)
Cre05g2027 397 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 397 IPR001680 GO:0005515(InterPro)
Cre05g2027 397 PANTHER TRANSDUCIN BETA-LIKE 3 50 392 - -
Cre05g2027 397 Pfam WD domain, G-beta repeat 324 349 IPR001680 GO:0005515(InterPro)
Cre05g2027 397 Pfam WD domain, G-beta repeat 353 390 IPR001680 GO:0005515(InterPro)
Cre05g2027 397 ProSitePatterns Trp-Asp (WD) repeats signature. 378 392 IPR019775 -
Cre05g2027 397 SMART WD40_4 310 349 IPR001680 GO:0005515(InterPro)
Cre05g2027 397 SMART WD40_4 352 391 IPR001680 GO:0005515(InterPro)
Cre05g2027 397 SMART WD40_4 264 303 IPR001680 GO:0005515(InterPro)
Cre05g2027 397 SMART WD40_4 61 104 IPR001680 GO:0005515(InterPro)
Cre05g2027 397 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 397 - -
Cre05g2027 397 SUPERFAMILY WD40 repeat-like 50 391 IPR036322 GO:0005515(InterPro)
Cre05g2027 397 Gene3D - 230 396 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2027 K24770 - - csv:101213197 654.825
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1053 . . . . . . . . . . Cma01g01949 . Car01g01523 . . . . . . . . . . . . . . . . . . . Cone7ag1864 . . Lsi04g01719 . . . . . . . . . . . Sed01g2508 Cmo01g02010 . . . . . . Cpe02g00090 Bhi09g02120 Tan01g4986 Cmetu02g1305 . Hepe01g1640 Mch11g0142 . Cla05g01896 Cam05g2032 Cec05g2041 Cco05g2097 Clacu05g2024 Cmu05g1904 Cre05g2027 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012184 2 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 29